YRC Public Data Repository - Protein Structure Prediction

Protein:	ppk16
Organism:	Schizosaccharomyces pombe
Length:	672 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk16.

Description	E-value	Query Range	Subject Range
gi\|114654995 - gi\|114654995\|ref\|XP_001138412.1\| PREDICTED: MAP/microtubule affinity-regulating kinase 3 isoform 13 ...	384.0	[0..4]	[659..18]
gi\|46852166 - gi\|46852166\|ref\|NP_002367.4\| MAP/microtubule affinity-regulating kinase 3 isoform c [Homo sapiens]	382.0	[0..4]	[659..30]
gi\|61354596 - gi\|61354596\|gb\|AAX41026.1\| MAP/microtubule affinity-regulating kinase 3 [synthetic construct]	382.0	[0..4]	[659..30]
gi\|27923329, gi\|... - gi\|27923329\|gb\|AAO27568.1\|AF509738_1 Ser/Thr protein kinase PAR-1B alpha [Xenopus laevis], gi\|147899...	381.0	[0..4]	[660..36]
gi\|73964085 - gi\|73964085\|ref\|XP_868624.1\| PREDICTED: similar to MAP/microtubule affinity-regulating kinase 3 isof...	379.0	[0..20]	[659..45]

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Predicted Domain #1

Region A:
Residues: [1-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNEKANIS ASYNDLIATI CNPRISDVGT YRIESVVGEG SFGKVYLAAH LLTNTKVVLK  60
   61 SSCRKQAIIL AREIHHHRRL LHPNITRLYE VVCTEDRIYL AMEYCPNGEL YDWVAREKRL 120
  121 DEKTTCRIMW QLCCAIQYLH RQGCVHRDLK LENIFLDKAY NVKLGDFGFS RDSDCSRRTF 180
  181 MNTRCGTVAY CAPELVQGHK YIGECVDIWS LGIIMYALLI GRLPFDEDDV SLTEQKIINE 240
  241 CPQYPETLSK NSSSLLKSLL CKDYRLRPSI DQIISHPYFK ENGYHSSSIR DPRPSSKAEE 300
  301 KVRKRLEFVG VDMDQLNASI SQQRCDMFYG WWLLLLEKEM RKEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.09691
Match:	2qnjA
Description:	No description for 2qnjA was found.

Predicted Domain #2

Region A:
Residues: [345-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKKGLFHLH KGSSSAVHIA PATPSLKTAQ VSVMSNNQDS LKSRHTSSDS SNSLLSTFRS  60
   61 WLFDPKQKHT ADTLSSSAIR PRTPSPSAEN YLTQENFDSD NLSESLDNSV ENLTVFPSIN 120
  121 SFGRRHSNLP QTTHVDTGEQ NTPFTPPLLK TVNLDGNKDF TFPSNSQNSP SKSSNLSINI 180
  181 DIPPSPLQNT VISPQPTRRS RTPIRSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [552-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGRSSVASSR NSSRTRSYSN VSSASSNSLI SIISSKPSSS TVQRQTPFHS PFERLHKSFH  60
   61 FPSGEPFNTR INATAIFTVG SGRKNPQSSS SLMFNQSSVK EEEEPEETSF SDSSKHFTDL 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits