YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC20H4.02
Organism:	Schizosaccharomyces pombe
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC20H4.02.

Description	E-value	Query Range	Subject Range
gi\|46109550, gi\|... - gi\|46109550\|ref\|XP_381833.1\| hypothetical protein FG01657.1 [Gibberella zeae PH-1], gi\|42545515\|gb\|E...	298.0	[0..2]	[245..5]
gi\|40745983, gi\|... - gi\|67523035\|ref\|XP_659578.1\| hypothetical protein AN1974.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	295.0	[0..6]	[246..250]
gi\|38103481, gi\|... - gi\|39943842\|ref\|XP_361458.1\| hypothetical protein MGG_03932 [Magnaporthe grisea 70-15], gb\|EAA50173....	283.0	[0..12]	[247..59]
gi\|28881185, gi\|... - gi\|28881185\|emb\|CAD70367.1\| conserved hypothetical protein [Neurospora crassa], gi\|25369740\|pir\|\|T51...	277.0	[0..2]	[248..25]
gi\|207341012 - gi\|207341012\|gb\|EDZ69187.1\| YOR223Wp-like protein [Saccharomyces cerevisiae AWRI1631] YO223_YEAST - Transmembrane protein YOR223W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR223W PE... gi\|190407532 - gi\|190407532\|gb\|EDV10799.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151945312 - gi\|151945312\|gb\|EDN63555.1\| conserved protein [Saccharomyces cerevisiae YJM789] YOR223W - Putative protein of unknown function	273.0	[0..10]	[248..25]
gi\|32403982, gi\|... - gi\|32403982\|ref\|XP_322604.1\| hypothetical protein [Neurospora crassa], gi\|28917520\|gb\|EAA27219.1\| hy... gi\|85079963 - gi\|85079963\|ref\|XP_956455.1\| hypothetical protein [Neurospora crassa OR74A]	272.0	[0..13]	[248..637]
gi\|238879988 - gi\|238879988\|gb\|EEQ43626.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68492121, gi\|... - gi\|68492121\|ref\|XP_710162.1\| hypothetical protein CaO19.3517 [Candida albicans SC5314], gi\|46431306\|... orf19.3517 - orf19.3517 CGDID:CAL0005814 Assembly 19, Contig19-2027 (3716, 4555) CDS, translated using codon tabl...	263.0	[0..8]	[247..2]
gi\|44981551, gi\|... - gi\|45185796\|ref\|NP_983512.1\| ACR110Wp [Ashbya gossypii ATCC 10895], gi\|44981551\|gb\|AAS51336.1\| ACR11... gi\|44981551 - gi\|44981551\|gb\|AAS51336.1\| ACR110Wp [Ashbya gossypii ATCC 10895]	260.0	[0..18]	[246..26]
gi\|70993820, gi\|... - gi\|70993820\|ref\|XP_751757.1\| conserved membrane protein [Aspergillus fumigatus Af293], gi\|66849391\|g...	256.0	[0..4]	[246..17]
gi\|83768097 - gi\|83768097\|dbj\|BAE58236.1\| unnamed protein product [Aspergillus oryzae] gi\|169771537 - gi\|169771537\|ref\|XP_001820238.1\| hypothetical protein [Aspergillus oryzae RIB40]	251.0	[0..4]	[246..17]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSALKKWE IVIRFASSIP DLSLEISDAQ TTTIHSLFKI VRNRIPECRD KQLKMVFQGR  60
   61 LLSPGFTVER AVRGNWQRDE NDDPNIVQKA FIHCIVGPTL TEEELASQDQ AQSGLNSNSE 120
  121 SPDDLQNAQT GETLRGFDRL REAGFTETEV NNLRSQFHRL RGTNLD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.27
Match:	2fnjB
Description:	No description for 2fnjB was found.

Predicted functions:

Term	Confidence	Notes
binding	0.900886174548043	bayes_pls_golite062009
protein binding	0.521796923666192	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [167-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLTEDAIREA EDDWIDNGGQ NSSADELDMS YETLLAGVLI GFFGGAIACY FLWERTMFSL  60
   61 RMQLSILVGI ICNFAYGLLH SYRW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: