YRC Public Data Repository - Protein Structure Prediction

Protein:	erv1
Organism:	Schizosaccharomyces pombe
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erv1.

Description	E-value	Query Range	Subject Range
gi\|151943312 - gi\|151943312\|gb\|EDN61625.1\| sulfhydryl oxidase [Saccharomyces cerevisiae YJM789] ERV1 - Flavin-linked sulfhydryl oxidase of the mitochondrial intermembrane space (IMS), oxidizes Mia40p as ... gi\|190406945 - gi\|190406945\|gb\|EDV10212.1\| sulfhydryl oxidase [Saccharomyces cerevisiae RM11-1a] ERV1_YEAST - Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	217.0	[0..14]	[177..21]
gi\|28921166, gi\|... - gi\|32421457\|ref\|XP_331172.1\| hypothetical protein [Neurospora crassa], gi\|28921166\|gb\|EAA30480.1\| au... gi\|85093549 - gi\|85093549\|ref\|XP_959716.1\| augmenter of liver regeneration [Neurospora crassa OR74A]	212.0	[0..12]	[177..34]
gi\|39961850, gi\|... - gi\|39961850\|ref\|XP_364723.1\| hypothetical protein MG09568.4 [Magnaporthe grisea 70-15], gb\|EAA53818....	198.0	[0..11]	[177..37]
ALR_MOUSE - FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=1 SV=2	194.0	[0..4]	[177..39]
gi\|220947962 - gi\|220947962\|gb\|ACL86524.1\| CG12534-PA [synthetic construct] gi\|24643392, gi\|... - gi\|24643392\|ref\|NP_608353.1\| CG12534-PA [Drosophila melanogaster], gi\|22832612\|gb\|AAF49017.2\| CG1253...	192.0	[0..3]	[177..18]
gi\|40744422, gi\|... - gi\|67525139\|ref\|XP_660631.1\| hypothetical protein AN3027.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	191.0	[0..6]	[177..47]
gi\|115384790, gi... - gi\|115384790\|ref\|XP_001208942.1\| augmenter of liver regeneration [Aspergillus terreus NIH2624], gi\|1...	189.0	[0..13]	[177..42]
gi\|49525710 - gi\|49525710\|emb\|CAG59329.1\| unnamed protein product [Candida glabrata] gi\|50287947, gi\|... - gi\|50287947\|ref\|XP_446402.1\| unnamed protein product [Candida glabrata], gi\|49525710\|emb\|CAG59329.1\|...	186.0	[0..14]	[177..12]
gi\|51890942 - gi\|51890942\|gb\|AAS50807.2\| ABR037Wp [Ashbya gossypii ATCC 10895] gi\|51890942, gi\|... - gi\|54299360\|ref\|NP_982983.2\| ABR037Wp [Ashbya gossypii ATCC 10895], gi\|51890942\|gb\|AAS50807.2\| ABR03...	185.0	[0..5]	[178..11]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFGKRYRDK ETGIIYDENG RPCKTCNIFS SFRNVAQQPN SSTVPEVKSN TQLESKQSSI  60
   61 DCNTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIPDSVSFPR LPDVAELGRS TWTFLHAMAA NFPKNPTPTQ QNDMSSFLYN FSKFYPCWSC  60
   61 AEDLRIWMAK YGNSPRVDSR ESLCEWICEA HNDVNERLGK PLFNCQVWSK KASELAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1oqcA
Description:	Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits