YRC Public Data Repository - Protein Structure Prediction

Protein:	ppk36
Organism:	Schizosaccharomyces pombe
Length:	830 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk36.

Description	E-value	Query Range	Subject Range
ATG1_EMENI - Serine/threonine-protein kinase atg1 OS=Emericella nidulans GN=atg1 PE=3 SV=1 ATG1_EMENI - Serine/threonine-protein kinase atg1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.4...	492.0	[0..7]	[830..17]
ATG1_PICAN - Serine/threonine-protein kinase ATG1 OS=Pichia angusta GN=ATG1 PE=3 SV=1 ATG1_PICAN - Serine/threonine-protein kinase ATG1 OS=Pichia angusta GN=ATG1 PE=3 SV=1	461.0	[0..11]	[806..9]
ATG1_MAGO7 - Serine/threonine-protein kinase ATG1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958... ATG1_MAGGR - Serine/threonine-protein kinase ATG1 OS=Magnaporthe grisea GN=ATG1 PE=1 SV=1	453.0	[0..9]	[821..14]
ATG1_DEBHA - Serine/threonine-protein kinase ATG1 - Debaryomyces hansenii (Yeast) (Torulaspora hansenii) gi\|49654679, gi\|... - gi\|50420939\|ref\|XP_459012.1\| hypothetical protein DEHA0D13684g [Debaryomyces hansenii CBS767], gi\|49...	443.0	[0..9]	[806..17]
ATG1_PODAS - Serine/threonine-protein kinase ATG1 OS=Podospora anserina GN=ATG1 PE=2 SV=1	440.0	[0..11]	[806..23]
ATG1_CHAGB - Serine/threonine-protein kinase ATG1 OS=Chaetomium globosum GN=ATG1 PE=3 SV=1 ATG1_CHAGB - Serine/threonine-protein kinase ATG1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 196...	439.0	[0..4]	[815..12]
ATG1_NEUCR - Serine/threonine-protein kinase atg-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708... ATG1_NEUCR - Serine/threonine-protein kinase atg-1 OS=Neurospora crassa GN=atg-1 PE=3 SV=1	436.0	[0..11]	[780..21]
ATG1_ASPTN - Serine/threonine-protein kinase atg1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg1 P...	436.0	[0..5]	[829..17]
gi\|238031362, gi... - gi\|254568910\|ref\|XP_002491565.1\| Protein serine/threonine kinase required for vesicle formation in a... ATG1_PICPA - Serine/threonine-protein kinase ATG1 OS=Komagataella pastoris GN=ATG1 PE=3 SV=1 jgi\|Picpa1\|37626... - null	435.0	[0..9]	[806..4]
gi\|46122339, gi\|... - gi\|46122339\|ref\|XP_385723.1\| hypothetical protein FG05547.1 [Gibberella zeae PH-1], gi\|42552248\|gb\|E...	434.0	[0..11]	[817..21]

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Predicted Domain #1

Region A:
Residues: [1-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQTSTNQT IGPYVIRSEI GRGSFAIVYK GKHTETNRVI SIKSVLTKKL TKKLLENLES  60
   61 EISILKEIRH VHVVELIDCI KAGRFIHLVM EYCSLGDLSY FIRKREKFNS IPSLAWINID 120
  121 HPPVYKAGLN ETLVRHFTQQ LASALQFLRS RSLIHRDVKP QNLLLQPPPT AAYLEEHPQF 180
  181 VGSPKLPMLK LADFGFARYL QTSSMAETLC GSPLYMAPEI LRYEKYDAKA DLWSVGAVLY 240
  241 EMAVGKPPFK APNHVELLRR IQKAKDVIKF PEEAFIHPDI KTLICALLKQ NPADRIDYDG 300
  301 FFSSIVVTTP LDDASTLTGS DIQDAVKEIN IPSSSPAYIT DFFPKSNPGA PAPPGGLLRQ 360
  361 AFQAQGSSIQ PSEIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.154902
Match:	2bdwA
Description:	Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [376-479]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRRVPHRYAQ DGNTLPYTPV FPPESAPAAS IFPPRLTSKQ PIPMASPAKL TSDTSNKSSA  60
   61 YVVVDHHPII SSTQLSNESL THEQSINGNS PSPNEGVFQG SFSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [480-584]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESAPVNNHAF PHTSRMQIPY MKPNAFPSNP TYIASTPVTQ LRRAFEQATA HVPQSGGGAR  60
   61 NKSALERALN VANARLNEVV VDGMTDNGNT SLPTKESNLD NNVNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [585-723]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQPSLPDTGK RLLDVLESIA MKSNSVYHLA EVKLAQIIPS LSDEMKPGDT LLDRPLTPFS  60
   61 LVMLAKESYV LYERDIELLQ VAFDGVAAFW ANSEERASPD CQQAIEWFRQ RYSESLEKSQ 120
  121 FLREIIISQS AAHSLPTTK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [724-830]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVSASQLIYH RALDLSRNAA TSELSGNDAQ ACLQNYRLAA HLLESLLESN FSTPDGANDS  60
   61 NNSVTIRNLI ALITKRQELL QSKQIQANVA NKVTESVAKI TLAPNLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits