YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1709.16c
Organism:	Schizosaccharomyces pombe
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1709.16c.

Description	E-value	Query Range	Subject Range
gi\|7268255, gi\|2... - gi\|7485146\|pir\|\|F71414 hypothetical protein - Arabidopsis thaliana, gi\|7268255\|emb\|CAB78551.1\| hypot...	266.0	[0..6]	[284..778]
gi\|47900738 - gi\|47900738\|gb\|AAT39310.1\| 4,5-DOPA dioxygenase extradiol-like protein, putative [Solanum demissum]	264.0	[0..13]	[278..43]
DODA_BETVU - 4,5-DOPA dioxygenase extradiol OS=Beta vulgaris GN=DODA PE=1 SV=1	258.0	[0..13]	[276..10]
gi\|92871222 - gi\|92871222\|gb\|ABE80304.1\| Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B [Medicag...	253.0	[0..13]	[271..6]
gi\|77384210, gi\|... - gi\|77460207\|ref\|YP_349714.1\| extradiol ring-cleavage dioxygenase III subunit B [Pseudomonas fluoresc...	250.0	[0..10]	[280..1]
gi\|70731601, gi\|... - gi\|70731601\|ref\|YP_261342.1\| aromatic ring-opening dioxygenase, putative [Pseudomonas fluorescens Pf...	248.0	[0..10]	[280..1]
gi\|22202675, gi\|... - gi\|34907366\|ref\|NP_915030.1\| P0471B04.17 [Oryza sativa (japonica cultivar-group)], gi\|22202675\|dbj\|B...	247.0	[0..11]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVPQLERL IPALYLAHGS PFLMLPQSSD DEVFSNDSKL GGLHYQFLEQ LGPFLLEKFR  60
   61 PKGIIVFSAH YESRGSVEVY SRDDENPLFY DYYGFPDYLY QIKFHSKGSK RIADQIISAL 120
  121 KEYQIPAKTV SGDRGLDHGV FVPFKIMFPD GLNIPLIEVS MHTLDPMQLY KVGQALQSLR 180
  181 KEYLIVSGGL NIHTFEDLSA FNEDTAADGY KEFQLDILKA IETDKQNDRL NKLLGLQLHP 240
  241 YFRKAHPREE HFVPLYVAAG LGSSGKSKVV CDLYGAVSAF FGIDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.39794
Match:	2pw6A
Description:	No description for 2pw6A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.48772648834229	bayes_pls_golite062009
dioxygenase activity	0.778026315854975	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	0.676429180336887	bayes_pls_golite062009
catalytic activity	0.639120026974844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: