YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2F3.02
Organism:	Schizosaccharomyces pombe
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2F3.02.

Description	E-value	Query Range	Subject Range
gi\|113475260, gi... - gi\|71677462\|ref\|ZP_00675199.1\| TPR repeat:Protein of unknown function DUF323 [Trichodesmium erythrae...	154.0	[0..1]	[192..337]
gi\|72397563, gi\|... - gi\|73670401\|ref\|YP_306416.1\| hypothetical protein Mbar_A2941 [Methanosarcina barkeri str. Fusaro], g...	150.0	[0..1]	[188..379]
gi\|116066974, gi... - gi\|116075659\|ref\|ZP_01472918.1\| TPR repeat [Synechococcus sp. RS9916], gi\|116066974\|gb\|EAU72729.1\| T...	146.0	[0..1]	[192..85]
gi\|40063048 - gi\|40063048\|gb\|AAR37904.1\| TPR domain protein [uncultured marine bacterium 560]	143.0	[0..2]	[191..96]
gi\|221563034, gi... - gi\|222053745\|ref\|YP_002536107.1\| TPR repeat-containing protein [Geobacter sp. FRC-32], gi\|221563034\|...	142.0	[0..2]	[191..452]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	141.0	[0..1]	[187..154]
gi\|46119251, gi\|... - gi\|67923685\|ref\|ZP_00517153.1\| TPR repeat:TPR repeat [Crocosphaera watsonii WH 8501], gi\|67854485\|gb...	139.0	[0..1]	[191..330]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	139.0	[0..1]	[187..153]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAKQESVVA PQVDVSKWSG KELELGKKVN EYAKSLATFK YPFFIPPPYP PAKPNMALST  60
   61 QVNKMKQTAN EAFKRKKYEE AKKLYGLALQ LALNRCTWEP SILTREEASV MLCNRAAAEI 120
  121 ALSQFPEALA DANAALKIRN NYGKCYYRKA KALEAMHRIE EAKQVVRDGL ILAEPVTRNE 180
  181 LVALWASYTE KD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits