YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl25
Organism:	Schizosaccharomyces pombe
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl25.

Description	E-value	Query Range	Subject Range
gi\|38110175, gi\|... - gi\|39951889\|ref\|XP_363661.1\| hypothetical protein MGG_01587 [Magnaporthe grisea 70-15], gb\|EAA55936....	197.0	[0..12]	[138..16]
gi\|46124941, gi\|... - gi\|46124941\|ref\|XP_387024.1\| hypothetical protein FG06848.1 [Gibberella zeae PH-1], gi\|42553527\|gb\|E...	189.0	[0..11]	[131..13]
gi\|85113079 - gi\|85113079\|ref\|XP_964460.1\| hypothetical protein NCU02804 [Neurospora crassa OR74A] gi\|32419028, gi\|... - gi\|32419028\|ref\|XP_329992.1\| hypothetical protein [Neurospora crassa], gi\|28926243\|gb\|EAA35224.1\| co...	161.0	[0..11]	[131..14]
gi\|88185742, gi\|... - gi\|88185742\|gb\|EAQ93210.1\| hypothetical protein CHGG_01445 [Chaetomium globosum CBS 148.51], gi\|1161...	150.0	[0..12]	[111..15]
gi\|67522358, gi\|... - gi\|67522358\|ref\|XP_659240.1\| hypothetical protein AN1636.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	149.0	[0..10]	[131..13]
RM25_YEAST - 54S ribosomal protein L25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943353 - gi\|151943353\|gb\|EDN61666.1\| YmL25 [Saccharomyces cerevisiae YJM789] gi\|190406904 - gi\|190406904\|gb\|EDV10171.1\| mitochondrial 60S ribosomal protein L25 [Saccharomyces cerevisiae RM11-1... MRPL25 - Mitochondrial ribosomal protein of the large subunit	144.0	[0..6]	[130..4]
orf19.7675 - orf19.7675 CGDID:CAF0007124 Assembly 19, Contig19-2518 (213058, 212582) CDS, reverse complemented, t... gi\|68473255, gi\|... - gi\|68473255\|ref\|XP_719433.1\| likely mitochondrial ribosomal protein MRPL25p [Candida albicans SC5314...	143.0	[0..6]	[138..8]
gi\|44983852, gi\|... - gi\|45190810\|ref\|NP_985064.1\| AER207Cp [Ashbya gossypii ATCC 10895], gi\|44983852\|gb\|AAS52888.1\| AER20... gi\|44983852 - gi\|44983852\|gb\|AAS52888.1\| AER207Cp [Ashbya gossypii ATCC 10895]	138.0	[0..6]	[129..2]
gi\|49527590, gi\|... - gi\|50291691\|ref\|XP_448278.1\| unnamed protein product [Candida glabrata], gi\|49527590\|emb\|CAG61239.1\|... gi\|49527590 - gi\|49527590\|emb\|CAG61239.1\| unnamed protein product [Candida glabrata]	138.0	[0..5]	[130..3]
gi\|169773373 - gi\|169773373\|ref\|XP_001821155.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769016 - gi\|83769016\|dbj\|BAE59153.1\| unnamed protein product [Aspergillus oryzae] gi\|238491358, gi... - gi\|238491358\|ref\|XP_002376916.1\| 60S ribosomal protein L25, putative [Aspergillus flavus NRRL3357], ...	137.0	[0..11]	[131..13]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVFTKEALE RLPIQLGNFF KKFPPENPNA WTTNPNRQNP FLATRNPQNG LVINPYYSNR  60
   61 RQAEIYKEAR LQNLDNLLPQ QMSWQKDSTR HILKGLLNPK GKISERKRDE ILENRRLKLS 120
  121 ESLKKTSKFK NERVCKLLYF HDFLISIY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.382	f.14.1	Voltage-gated potassium channels
View	Download	0.380	f.14.1	Voltage-gated potassium channels
View	Download	0.277	f.14.1	Voltage-gated potassium channels
View	Download	0.256	a.266.1	Description not found.
View	Download	0.221	c.56.3	Peptidyl-tRNA hydrolase
View	Download	0.210	a.47.2	t-snare proteins
View	Download	0.208	c.23.1	CheY-like
View	Download	0.206	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits