YRC Public Data Repository - Protein Structure Prediction

Protein:	sbh1
Organism:	Schizosaccharomyces pombe
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sbh1.

Description	E-value	Query Range	Subject Range
gi\|44981710 - gi\|44981710\|gb\|AAS51460.1\| ACR234Cp [Ashbya gossypii ATCC 10895] gi\|44981710, gi\|... - gi\|45185920\|ref\|NP_983636.1\| ACR234Cp [Ashbya gossypii ATCC 10895], gi\|44981710\|gb\|AAS51460.1\| ACR23...	121.0	[0..12]	[99..2]
SC61B_PONAB - Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 ENSPTRT00000039176 - null tr\|G3H7H4\|G3H7H4... - Protein transport protein Sec61 subunit beta OS=Cricetulus griseus GN=I79_006305 PE=4 SV=1 CCDS6741.1_1 - null SC61B_PONPY - Protein transport protein Sec61 subunit beta - Pongo pygmaeus (Orangutan) SEC61B - Sec61 beta subunit SC61B_CANLF - Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 gi\|149740327 - gi\|149740327\|ref\|XP_001504106.1\| PREDICTED: similar to protein translocation complex beta subunit [E... gi\|109110979 - gi\|109110979\|ref\|XP_001109722.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta] ENSCJAT00000021945 - null	118.0	[0..1]	[98..1]
gi\|109131069 - gi\|109131069\|ref\|XP_001102187.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta]	118.0	[0..1]	[98..1]
SC61B_MOUSE - Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 gi\|51980602 - gb\|AAH82171.1\| Unknown (protein for MGC:98571) [Xenopus laevis]	118.0	[0..1]	[98..1]
gi\|84202411, gi\|... - gi\|84202411\|gb\|AAI11653.1\| Sec61 beta subunit [Bos taurus], gi\|115497008\|ref\|NP_001068760.1\| Sec61 b...	118.0	[0..1]	[98..1]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	118.0	[0..1]	[98..1]
SC6B2_YEAST - Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1... SBH2 - Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulu... ORFP:6100 - YER019C-A, Contig c425 46829-47095 reverse complement gi\|190405581 - gi\|190405581\|gb\|EDV08848.1\| protein transport protein SEC61 beta 2 subunit [Saccharomyces cerevisiae... gi\|151944729 - gi\|151944729\|gb\|EDN62988.1\| conserved protein [Saccharomyces cerevisiae YJM789]	116.0	[0..13]	[96..2]
gi\|50736212 - gi\|50736212\|ref\|XP_419082.1\| PREDICTED: similar to Protein transport protein SEC61 beta subunit [Gal...	116.0	[0..1]	[98..1]
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	116.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKASGSV KNSAASAPGG PKSQIRRRAA VEKNTKESNS GPAGARAAGA PGSTPTLLKL  60
   61 YTDEASGFKV DPVVVMVLSV GFIASVFLLH IVARILKKFA SE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.271	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.208	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.207	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.202	a.35.1	lambda repressor-like DNA-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits