YRC Public Data Repository - Protein Structure Prediction

Protein:	grn1
Organism:	Schizosaccharomyces pombe
Length:	470 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grn1.

Description	E-value	Query Range	Subject Range
gi\|116075028, gi... - gi\|116075028\|ref\|ZP_01472288.1\| GTP-binding protein EngA [Synechococcus sp. RS9916], gi\|116067225\|gb...	191.0	[0..81]	[464..2]
DER_SYNPX - GTPase Der OS=Synechococcus sp. (strain WH8102) GN=der PE=3 SV=1	190.0	[0..81]	[464..2]
gi\|88809283, gi\|... - gi\|88809283\|ref\|ZP_01124792.1\| GTP-binding protein EngA [Synechococcus sp. WH 7805], gi\|88787225\|gb\|...	189.0	[0..81]	[464..2]
gi\|87125615, gi\|... - gi\|87125615\|ref\|ZP_01081460.1\| putative GTP-binding protein [Synechococcus sp. RS9917], gi\|86166915\|...	189.0	[0..81]	[464..2]
DER_SYNSC - GTPase Der OS=Synechococcus sp. (strain CC9605) GN=der PE=3 SV=1	188.0	[0..82]	[464..3]
DER_SYNS9 - GTPase Der OS=Synechococcus sp. (strain CC9902) GN=der PE=3 SV=1	187.0	[0..81]	[464..2]
DER_PROMM - GTPase Der OS=Prochlorococcus marinus (strain MIT 9313) GN=der PE=3 SV=1	187.0	[0..81]	[464..2]
DER_CHLSY - GTPase Der OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=der PE=3 SV=1 DER_CHLAA - GTPase Der OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=der PE=3 SV=1	187.0	[0..85]	[432..6]
gi\|116066539, gi... - gi\|116071134\|ref\|ZP_01468403.1\| GTP-binding protein EngA [Synechococcus sp. BL107], gi\|116066539\|gb\|...	186.0	[0..81]	[464..2]
gi\|40746652, gi\|... - gi\|67518114\|ref\|XP_658819.1\| hypothetical protein AN1215.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	186.0	[0..1]	[468..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLKKKSKR RTTRLRSRIE KKAAESKRKQ KRADKKNPQW KSRIPKDPGI PNSFPYKDKI  60
   61 LAEIEEQKRI REEEKLARRA SGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.387216
Match:	PF08701.2
Description:	No description for PF08701.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.857	0.039	rRNA processing	f.14.1	Voltage-gated potassium channels

Predicted Domain #2

Region A:
Residues: [84-470]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDAAMEEEDA VDENGSLMIS KIAEAAQASN PDDEEEFVME EDNLGEAPLL VDSESYEASV  60
   61 KADTSRKAYD KEFKKVVEAS DVILYVLDAR DPEGTRSKDV ERQVLASSAE EKRLIFVINK 120
  121 IDLVPSEVLN KWVTYLRNFF PTIPMRSASG SGNSNLKHQS ASASSTISNL LKSLKSYSAK 180
  181 KKLKSSLTVG VIGYPNVGKS SVINALVNRS ANGRSAPCPA GNVAGMTTSL REVKLDNKLR 240
  241 LVDSPGIVFP SSDSKDDLYR LVMLNAVSST KVDDPVAVAS YILQFLSRVP GQLERMFQRY 300
  301 ELPPLLNTSD IDTATDFLVN IARKRGRLGR GGIPNLNAAA NIVINDWHAG RIEWWAEPEV 360
  361 INEKNSSEVQ DTQIVTEWAK EFDLNDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits