YRC Public Data Repository - Protein Structure Prediction

Protein:	tom70
Organism:	Schizosaccharomyces pombe
Length:	625 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tom70.

Description	E-value	Query Range	Subject Range
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	371.0	[0..24]	[623..21]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	350.0	[0..6]	[624..284]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	344.0	[0..3]	[623..389]
gi\|118385554 - gi\|118385554\|ref\|XP_001025906.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|89307673, gi\|... - gi\|89307673\|gb\|EAS05661.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183855...	332.0	[0..10]	[623..404]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	317.0	[0..82]	[593..20]

Back

Predicted Domain #1

Region A:
Residues: [1-625]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGISNAENG KAIVSSGVLN SVSAFVRRHR TFVYTIGAVA VFATVGGVYH VQQKKASHKR  60
   61 SKKLKAHQDK AESKVNEGKN EAAKVVKEED LKSSETGKDV ETAAAAAAAA KKKKKNKKKV 120
  121 KAKKVGDSSV DKIATEESVK SMTKEERAKL AAELKTLGNK AYGQKEYANA IDYYTQAITC 180
  181 SHDPIFFSNR AACYAAIGDF EQVIKDTSEA LSLDSSYVKA LNRRSAAYEQ LGKLDEALMD 240
  241 STVSCIFDGF ANESMTATVE RLLKKVAEKK SSALLKERPP KLPAASFIQT YLDSFHAQPK 300
  301 PLFDNKFDGD AALAEAYEYL EKGEYQLSYD KAKESCLGSF SSPSVNARTH NLVGTFKFVS 360
  361 GDSKGSMENF NAAIKLDRKF IQPYIRLSAA YLDENDNEKM WKVLNDAESV DKTDSDLYYH 420
  421 RAQVRFVSGE FAEAISDYQK SIALDDSFIY SHIQLGVAQY KTHAIAESMK TFEDCKKRFP 480
  481 NSSEVYNYFG EILLDQQKFD DAVKNFDHAI ELEKREHLTI MSAMPLINKA LAVFQWKKDI 540
  541 SQAENLCRQA LSADPECDIA IASMAQFLLQ QGKAREALEY FEKSAQLART ESEMVNAFSY 600
  601 AEATRTQIAL TEKYPQLVGR LSNPM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits