YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCPJ732.02c
Organism:	Schizosaccharomyces pombe
Length:	555 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCPJ732.02c.

Description	E-value	Query Range	Subject Range
GLPK2_THEMA, GLK... - Glycerol kinase 2 OS=Thermotoga maritima GN=glpK2 PE=3 SV=2, (Q9X1E4) Glycerol kinase 2 (EC 2.7.1.30... GLPK2_THEMA - Glycerol kinase 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=glpK2 ...	441.0	[0..2]	[546..4]
GLPK_CARHZ - Glycerol kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=gl...	434.0	[0..2]	[544..6]
gi\|254479176, gi... - gi\|254479176\|ref\|ZP_05092524.1\| glycerol kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348899... GLPK_CALS4 - Glycerol kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 ... GLPK_THETN - Glycerol kinase OS=Thermoanaerobacter tengcongensis GN=glpK PE=3 SV=1	432.0	[0..2]	[545..5]
gi\|26111123, gi\|... - gi\|26250692\|ref\|NP_756732.1\| glycerol kinase [Escherichia coli CFT073], gi\|26111123\|gb\|AAN83306.1\|AE...	427.0	[0..2]	[546..42]
gi\|91075041, gi\|... - gi\|91213467\|ref\|YP_543453.1\| glycerol kinase [Escherichia coli UTI89], gi\|91075041\|gb\|ABE09922.1\| gl...	427.0	[0..2]	[546..42]
gi\|242257967, gi... - gi\|242257967\|ref\|ZP_04802809.1\| glycerol kinase [Thermoanaerobacter sp. X513], gi\|242230500\|gb\|EES32... GLPK_THEPX - Glycerol kinase OS=Thermoanaerobacter sp. (strain X514) GN=glpK PE=3 SV=1	425.0	[0..2]	[545..5]
GLPK_PSEE4 - Glycerol kinase OS=Pseudomonas entomophila (strain L48) GN=glpK PE=3 SV=1 gi\|95109392 - gi\|95109392\|emb\|CAK14092.1\| glycerol kinase [Pseudomonas entomophila L48]	425.0	[0..2]	[546..10]
gi\|193068070, gi... - gi\|75238369\|ref\|ZP_00722368.1\| COG0554: Glycerol kinase [Escherichia coli E110019], gi\|193068070\|ref...	425.0	[0..2]	[546..7]
GLPK_CLOPS - Glycerol kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=glpK PE=3 SV=1	425.0	[0..2]	[545..5]
GLPK_PSEPK - Glycerol kinase OS=Pseudomonas putida (strain KT2440) GN=glpK PE=3 SV=1	425.0	[0..2]	[546..10]

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Predicted Domain #1

Region A:
Residues: [1-555]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLGLDLSTQ QLKGVVIDES LNVHQEVAVD FDRDLSDYNT IKGVYRNGYE VFAPVCMWLD  60
   61 AIDLLFERLK ASVDVSKIQA ISGAGQQHAS VFLLKGSKKA LNSLDAKSSL KQQLESLIHP 120
  121 TSPNWQDAST TKECEELESC IGGAKALADL TGSKAHLRFT GPQIKRFRRL HPETYENTER 180
  181 IALVSNFLAS VLLQTEAPLD ISDVCGMNLW DIQNEKFDIR LLEEVAGNSK GPDLANKLGT 240
  241 VEINGAKHLG PIGKYFVKKY GFSPNCQIIP LTGDNPATIL SLPLRPGKDV LLSLGTSTTA 300
  301 LMATQNYVCS PEYHMFAHPV TQNHYMVMLC YKNGSLAREQ VRNTINEKYN VSDNTSWDRF 360
  361 NESILNPNIK GAGEKKQLGL FYPQREILPA VGPGTWRFAI QGTELYQVDK DEESWDYPDE 420
  421 DASAIVESQN LDIRMRITPL LTGIPQPDRV YVVGGASRNE AIVFKISQVL GCDVYRLKHG 480
  481 GSNACAVGGA IKAAYAMNGK GFTFEEYVNK SWDESKKIEL IMNKPSAQTY EEYGKLLPFL 540
  541 KKAEDIAIQQ SDIRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	2p3rA
Description:	No description for 2p3rA was found.

Predicted functions:

Term	Confidence	Notes
carbohydrate kinase activity	2.33338276303563	bayes_pls_golite062009
hexokinase activity	1.70516840340504	bayes_pls_golite062009
binding	1.44744777288539	bayes_pls_golite062009
glucokinase activity	0.47468456642723	bayes_pls_golite062009
kinase activity	0.345540463799773	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.324655711623803	bayes_pls_golite062009
catalytic activity	0.296484721581333	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.214617425075414	bayes_pls_golite062009
protein binding	0.213044068887966	bayes_pls_golite062009
nucleic acid binding	0.132883501060045	bayes_pls_golite062009
transferase activity	0.105619024604158	bayes_pls_golite062009
glucose binding	0.0361890405625098	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: