YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4B3.13
Organism:	Schizosaccharomyces pombe
Length:	539 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4B3.13.

Description	E-value	Query Range	Subject Range
gi\|113548993, gi... - gi\|115453843\|ref\|NP_001050522.1\| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi\|113548993...	301.0	[0..73]	[538..622]
gi\|42551894, gi\|... - gi\|46123591\|ref\|XP_386349.1\| hypothetical protein FG06173.1 [Gibberella zeae PH-1], gi\|42551894\|gb\|E...	294.0	[0..4]	[510..590]
gi\|38105054, gi\|... - gi\|39942086\|ref\|XP_360580.1\| hypothetical protein MG03123.4 [Magnaporthe grisea 70-15], gb\|EAA51528....	293.0	[0..4]	[537..168]
gi\|382954 - gi\|382954\|prf\|\|1901324A ethionine resistance gene	288.0	[0..1]	[535..74]
gi\|21627817 - gi\|21627817\|emb\|CAD37149.1\| hypothetical protein [Aspergillus fumigatus] gi\|159124568 - gi\|159124568\|gb\|EDP49686.1\| MATE efflux family protein subfamily, putative [Aspergillus fumigatus A1... gi\|70992299, gi\|... - gi\|70992299\|ref\|XP_750998.1\| MATE efflux family protein subfamily [Aspergillus fumigatus Af293], gi\|...	269.0	[0..3]	[535..119]
gi\|30047775 - gi\|30047775\|gb\|AAH50592.1\| SLC47A1 protein [Homo sapiens]	268.0	[0..46]	[533..6]
gi\|28925921, gi\|... - gi\|32408909\|ref\|XP_324935.1\| hypothetical protein [Neurospora crassa], gi\|28925921\|gb\|EAA34916.1\| co... gi\|85111887 - gi\|85111887\|ref\|XP_964152.1\| hypothetical protein NCU00755 [Neurospora crassa OR74A]	263.0	[0..4]	[537..137]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGENDPLLG SYKPKRRRSS LVYGLSRPQF LDTAASEVSP IPQERPTTSL RKPTPRVQRP  60
   61 ATDVSYGALE ETEENESIAS GLSV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.31
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [85-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEDFNSKAWW KELTLLIKFA TPVVLTSLLQ YGEVVTTVFS LGHLGKTELA AASLSNMTAT  60
   61 ITAFAIYQGI VSALDTVGTQ SFGSGNYEMV GLHLQRILAI LLLIQFPIFL IWWKIEGILL 120
  121 FLRQDPLTCM FAAKYMRVMM LASPAYALFE ALKRFLQVQG IFHPVTYILA IVVPINIFLN 180
  181 YLFVWSPWVG FGFLGAPVAV ALTLWSACAV LIIYIMKVNG RQAWGGF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.420216
Match:	PF01554.9
Description:	No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [312-539]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SREALKNWGP LCRLAVPGVI MICSEYWAFE LVTFASGVLG TTELASMSVL STTSTLSYNL  60
   61 AFGVAAAAAT RVGNLIGAGN TKLAKLATHV SINLGAAIGV IIAVILFLTR NTWTYIFTSD 120
  121 KDVVALVATI IPLVALINIA DNTQCVAGGL LRGQGRQRIG GVVNFIAYYL LGLPVAIILC 180
  181 FKLDWGLYGL WIGIGAAILI IAGVETWCSL HVNWDHLVEL ANRQFDEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.769551
Match:	PF01554.9
Description:	No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits