YRC Public Data Repository - Protein Structure Prediction

Protein:	fmn1
Organism:	Schizosaccharomyces pombe
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fmn1.

Description	E-value	Query Range	Subject Range
gi\|7485723, gi\|3... - pir\|\|T05155 hypothetical protein F18E5.90 - Arabidopsis thaliana, gi\|7268944\|emb\|CAB81254.1\| putativ...	207.0	[0..3]	[161..121]
gi\|73946766 - gi\|73946766\|ref\|XP_541275.2\| PREDICTED: similar to riboflavin kinase [Canis familiaris]	202.0	[0..15]	[163..431]
gi\|110288837, gi... - gi\|37532372\|ref\|NP_920488.1\| putative Riboflavin biosynthesis protein ribF [Oryza sativa (japonica c...	201.0	[0..9]	[162..156]
gi\|76624430 - gi\|76624430\|ref\|XP_592590.2\| PREDICTED: similar to riboflavin kinase [Bos taurus]	201.0	[0..10]	[163..94]
gi\|23271414 - gi\|23271414\|gb\|AAH33521.1\| Rfk protein [Mus musculus]	193.0	[0..17]	[163..55]
gi\|7023634 - gi\|7023634\|dbj\|BAA92033.1\| unnamed protein product [Homo sapiens] gi\|18845101 - gi\|18845101\|gb\|AAL79554.1\|AF482734_1 riboflavin kinase [synthetic construct]	193.0	[0..19]	[163..8]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVNLEEKRP EIVGPEKVQS PYPIRFEGKV VHGFGRGSKE LGIPTANISE DAIQELLRYR  60
   61 DSGVYFGYAM VQKRVFPMVM SVGWNPYYKN KLRSAEVHLI ERQGEDFYEE IMRVIVLGYI 120
  121 RPELNYAGLD KLIEDIHTDI RVALNSMDRP SYSSYKKDPF FKV

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Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	1n05A
Description:	Riboflavin kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
riboflavin kinase activity	9.29267848240079	bayes_pls_golite062009
FMN adenylyltransferase activity	7.46254172012226	bayes_pls_golite062009
kinase activity	2.06841232315201	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	2.04516341526682	bayes_pls_golite062009
adenylyltransferase activity	2.0444249049462	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.03375669869689	bayes_pls_golite062009
catalytic activity	2.03120709726017	bayes_pls_golite062009
transferase activity	1.98609814060536	bayes_pls_golite062009
nucleotidyltransferase activity	1.19728391053646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: