YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC869.01
Organism:	Schizosaccharomyces pombe
Length:	583 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC869.01.

Description	E-value	Query Range	Subject Range
GATA_PELCD - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1...	502.0	[0..64]	[569..1]
gi\|95132536, gi\|... - gi\|95931418\|ref\|ZP_01314126.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Desulfuromonas acetox...	496.0	[0..64]	[572..1]
GAA2_CLOAB, GATA... - Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum GN=gatA2 PE=3 SV=1, (Q... GATA2_CLOAB - Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM...	494.0	[0..64]	[562..1]
GATA_GEOKA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus (strain HTA426) GN=gatA PE... GATA_GEOKA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus GN=gatA PE=3 SV=1	491.0	[0..64]	[571..1]
GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 364... GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1	491.0	[0..69]	[571..6]
GATA_GEOSE - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus stearothermophilus GN=gatA PE=3 SV=1	489.0	[0..64]	[571..1]
GATA_GEOUR - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 ...	484.0	[0..64]	[569..1]
GATA_METBF - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN...	483.0	[0..69]	[571..5]
GATA_THICR - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=...	483.0	[0..66]	[571..1]

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Predicted Domain #1

Region A:
Residues: [1-583]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLQLLFLTL AQLAKHGLAI PLLQSSKTTT NSTLVASQEV NFTTYVYPDT NSTNIFPMPK  60
   61 CQNITLEDAT IDQLQNYMEN GILTSTDIVH CYLDRYLQVN PYVNGILQLN PDVLTIASEL 120
  121 DDERANGIIR GPLHGIPFIV KDNFATKDKM DTTAGSYALL GSIVPRDAYV VKQLREAGAV 180
  181 LFGHATLSEW ADMRSNDYSE GYSARGGQSR CPFNLTVNPG GSSSGSAISV ASNMIAFALG 240
  241 TETDGSIIDP AMRNGVVGLK PTVGLTSRYG VIPESEHQDT TGPIARTVRD AVYVFQSMWG 300
  301 IDENDIYTLN QTGKTPEDGD YMKFLSNKTS LEGARFGLPW KRLWQNAKAD EIDRLLEVVK 360
  361 QIEEAGAIVY NNTNFYNLDV ISNDGWNWEL GSVNESEYTV VKVDFYNNIK SYLSEVKNTE 420
  421 IHSLEDIVEY NNKYMGTEGG KPNIVPAFSS GQDGFLASLE WGGVKNETYW QAVEYVRRTS 480
  481 QDEGIDYALN YTDPKTNDSF ILNGLLVPSG TSITYQQAAK AGYPMITLPI GVKTNGRPFG 540
  541 LGIMHSAWQE PQLIKYGSAI EDLLQYKAKP KFYEYVAKNV PVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.30103
Match:	1m21A
Description:	Peptide amidase Pam
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	3.16753436373904	bayes_pls_golite062009
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.35558934074841	bayes_pls_golite062009
binding	1.24905380693412	bayes_pls_golite062009
catalytic activity	0.906509857495572	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.301483171038292	bayes_pls_golite062009
protein binding	0.276132955069873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: