YRC Public Data Repository - Protein Structure Prediction

Protein:	chr2
Organism:	Schizosaccharomyces pombe
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chr2.

Description	E-value	Query Range	Subject Range
gi\|69255787, gi\|... - gi\|69255787\|ref\|ZP_00605529.1\| Sel1-like repeat [Magnetococcus sp. MC-1], gi\|68248152\|gb\|EAN30235.1\|...	230.0	[0..104]	[512..397]
gi\|84375186, gi\|... - gi\|84394204\|ref\|ZP_00992934.1\| hypothetical protein V12B01_19651 [Vibrio splendidus 12B01], gi\|84375...	226.0	[0..104]	[507..24]
gi\|30248264, gi\|... - gi\|30248264\|ref\|NP_840334.1\| hypothetical protein NE0240 [Nitrosomonas europaea ATCC 19718], gi\|3018...	215.0	[0..144]	[501..619]
gi\|32477819, gi\|... - gi\|32477819\|ref\|NP_870813.1\| hypothetical protein RB13005 [Rhodopirellula baltica SH 1], gi\|32448376...	212.0	[0..28]	[512..20]
gi\|88934891, gi\|... - gi\|88934891\|ref\|ZP_01140530.1\| Sel1-like repeat [Geobacter uraniumreducens Rf4], gi\|88918355\|gb\|EAR3...	210.0	[0..103]	[511..93]
CHR3_SCHPO - Chitin synthase regulatory factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr3 P... chr3 - chitin synthase regulatory factor Chr3	203.0	[0..23]	[497..436]
gi\|38099526, gi\|... - gi\|39970075\|ref\|XP_366428.1\| hypothetical protein MG10646.4 [Magnaporthe grisea 70-15], gb\|EAA46860....	202.0	[0..20]	[500..289]
gi\|52628517, gi\|... - gi\|52841406\|ref\|YP_095205.1\| TPR repeat-containing protein [Legionella pneumophila subsp. pneumophil...	201.0	[0..76]	[512..40]
gi\|53750914, gi\|... - gi\|54297129\|ref\|YP_123498.1\| hypothetical protein lpp1174 [Legionella pneumophila str. Paris], gi\|53...	200.0	[0..76]	[512..36]
gi\|53753948, gi\|... - gi\|54294116\|ref\|YP_126531.1\| hypothetical protein lpl1180 [Legionella pneumophila str. Lens], gi\|537...	200.0	[0..76]	[512..36]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSNGGTGS AHEWDRTTID YDIEPSSDTH AIEISSNDDY LHPLAQFKKS EEFDEVPTNT  60
   61 LIHEVPSFSD SASNIQSQRN LSPFKELEIV SKKKSEQTFS SAVDFSAINV KNLNLKSGLF 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEPPSYDPD YAFNQRSLQS DPGSDEMFRN FKKSISLEEL KSSYKLASAE MCEPETRLSF  60
   61 LQLALQAEKS SSRRNREYVA RKKEEAFDYL TSFVSQGNSF FGYSEALYLL AVCYGTGALR 120
  121 TEINEKEAYR LYKMAADL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	2fi7A
Description:	No description for 2fi7A was found.

Predicted Domain #3

Region A:
Residues: [259-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHVQAAYRVA ICLQMGFGVT QNTEEAIHYF FRAASGQHVG AMHRMALIYF RGLMSVKRDP  60
   61 VKAMYYLNLG ALEADHEFPQ ALYDLAELYE HGSSYLDGLL ELSPRKAFVL YHIAAKYGLK 120
  121 DAQLRVARCF ELGQLECDIN LVRSFVWYRR LARKRNPEAM WKLSQFYLNG VDDVIYPNPE 180
  181 LANEWAKAAA YKNHHLASTF VQDVGKEDVF EKTSITISNE ERKSRNSESL PKKKKRLSML 240
  241 SFKRSKNRES CIIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.045757
Match:	1ouvA
Description:	Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.37674270036607	bayes_pls_golite062009
protein binding	0.328664825514855	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: