YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1718.04
Organism:	Schizosaccharomyces pombe
Length:	675 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1718.04.

Description	E-value	Query Range	Subject Range
gi\|85090897 - gi\|85090897\|ref\|XP_958638.1\| hypothetical protein NCU05985 [Neurospora crassa OR74A] gi\|28920015, gi\|... - gi\|32410719\|ref\|XP_325840.1\| hypothetical protein [Neurospora crassa], gi\|28920015\|gb\|EAA29402.1\| hy...	610.0	[0..3]	[636..62]
gi\|42548236, gi\|... - gi\|46128777\|ref\|XP_388942.1\| hypothetical protein FG08766.1 [Gibberella zeae PH-1], gi\|42548236\|gb\|E...	593.0	[0..4]	[636..30]
gi\|38109832, gi\|... - gi\|39951229\|ref\|XP_363365.1\| hypothetical protein MGG_01291 [Magnaporthe grisea 70-15], gb\|EAA55640....	576.0	[0..4]	[634..31]
gi\|67538858, gi\|... - gi\|67538858\|ref\|XP_663203.1\| hypothetical protein AN5599.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	571.0	[0..5]	[632..13]
orf19.13237, orf... - SCT2 CGDID:CAL0002276 Assembly 19, Contig19-10234 (69343, 67187) CDS, reverse complemented, translat... gi\|46436975, gi\|... - gi\|68481565\|ref\|XP_715291.1\| likely glycerol-3-phosphate acyltransferase Gpt2 [Candida albicans SC53...	568.0	[0..3]	[647..40]
SCT1 - Glycerol 3-phosphate/dihydroxyacetone phosphate dual substrate-specific sn-1 acyltransferase of the ... GPT1_YEAST - Glycerol-3-phosphate O-acyltransferase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	568.0	[0..5]	[650..49]

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Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHTFIYDTC LWILSILIDF FFREVKTRGS FRVPRKGPLI LVAAPHANQF VDPLILMLQL  60
   61 RREVGRRTSI LVAAKSYRQR FIGLMSRAFG AIPVERAQDL AIRGEGKIFV VAEGDKTAIH 120
  121 GKDTLFTKHS VGDTLLLPNN YGSSHIASIK SDTLLYVKRE FRGEDAERVL LSPEGSSYKV 180
  181 APEIDQTYVY NEVRRRLVKG ACIALFPEGG SHDRPEMLPL KAGVAIMALE TLSQHPDCGL 240
  241 QLLPCGMNYF HPHRFRSRAV LEFGSPLSIP TEYVELYKAK KRREAIQGVL DMIYDALLSV 300
  301 TVQAPDYETL MVIQACRRLY KPAHIQFALP KVVDLNRKLI VGYNHFKHD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.34
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [350-564]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRVIRLHDKI LLYNRQLYRL GLRDHQVQSL QYSRFMILYK LVYRCCKLFL LALGALPGAI  60
   61 LFSPVFIAAH RISVKKAAAA LKASSVKIQG RDILATWKLL VALGMTPILY SFYALLCCYY 120
  121 IYSYKLIPHS SIFVYTVPII STFLFPMVTY AALRFGEVAV DIYKSIRPLF LALIPSKANA 180
  181 VYILKDERKQ LVAEVTDLIN KLGPELFPDF DPDRI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [565-675]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTIEKPERP SRFARRLSSS VASDVDNLSQ LHDTDLNSEV SAPAPLQNVY LYSPNPSALP  60
   61 PSDEEEKDIN DKAKLIRNAL RQRMGQRMTE IRSRDTPPEE VFSESDEELS D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits