YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC338.07c
Organism:	Schizosaccharomyces pombe
Length:	729 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC338.07c.

Description	E-value	Query Range	Subject Range
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	373.0	[0..8]	[727..75]
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	359.0	[0..38]	[720..6]
gi\|118385554 - gi\|118385554\|ref\|XP_001025906.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|89307673, gi\|... - gi\|89307673\|gb\|EAS05661.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183855...	345.0	[0..4]	[717..365]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	336.0	[0..3]	[727..224]
gi\|21228822, gi\|... - gi\|21228822\|ref\|NP_634744.1\| hypothetical protein MM_2720 [Methanosarcina mazei Go1], gi\|20907343\|gb...	325.0	[0..5]	[728..57]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVQLSPKE ITLFRTALKC YETKQYKKGL KAIEPLLERH PEHGESLAIK GILLHSLGNT  60
   61 KEGYDNVRLG LRND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2j9qA
Description:	No description for 2j9qA was found.

Predicted Domain #2

Region A:
Residues: [75-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGSGVCWHIF GLISRADKDY VQAAKCYINA HKLEKNNSSL LRDLALLQSQ LRQYKALADT  60
   61 RNALLQDNPG VRANWSALAV AQFLRGEYAS AYKIVDAFES TINQGVPVDT QEESEAMLFM 120
  121 NLVILKKDGV EDAYKHLLSI EKKVLDRVAF LETRAEYELY LSKMEEAKST IYLLLDRNPD 180
  181 NHQYYYNLQR AYGYEDASGK VLDSAEWLNL YSQLAKRYPK SECPTRLPLE KLEGDEFLTH 240
  241 VDLYLRKKLK RGIPSVFVDV KSLYKDTKKC KVVEDLVSKY ASSLSTTNKF SEDDDNSQIE 300
  301 IPTTLLWTYY FLAQHFDHVG ELEKAEKYVD LAIDHTPTLV ELFMTKARIS KHKGELQTAM 360
  361 EIMDHARKLD LQDRFINGKC AKYMLRNDEN ELAAKTVSLF TRNEAVGGAV GDLADMQCLW 420
  421 YMLEDGKSFA RQKKFALALK RFSTVFKIFD TWADDQFDFH FFAFRKGSLR TYLDLMSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2gw1A
Description:	No description for 2gw1A was found.

Predicted Domain #3

Region A:
Residues: [553-595]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDSVYDDPSF REAAQGSIEI YFALFDLPFA KYSPKLPDFE KLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1o1rA
Description:	Protein farnesyltransferase alpha-subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [596-729]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGEINEEEEK KIYKKLKKDL SKRLERAEKL KEADKSRAKS EDGMPVKYDE DPLGENLVAT  60
   61 SEPLKEAQKC LEKLLPYGDK NPSAYILAAQ LYTRLKNFDT ASKYLEQAKV ILGQNDPTVI 120
  121 STEKFYNSIK TQSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits