YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17A2.04c
Organism:	Schizosaccharomyces pombe
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17A2.04c.

Description	E-value	Query Range	Subject Range
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	195.0	[0..21]	[335..55]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	192.0	[0..21]	[335..54]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	188.0	[0..6]	[335..163]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	187.0	[0..6]	[335..300]
gi\|47222947 - gi\|47222947\|emb\|CAF99103.1\| unnamed protein product [Tetraodon nigroviridis]	185.0	[0..13]	[330..163]
gi\|74007684 - gi\|74007684\|ref\|XP_858918.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 11 ...	184.0	[0..13]	[335..172]

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Predicted Domain #1

Region A:
Residues: [1-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFQSSEVD PNTKNKNAEE MFNELNKVPF FMQSLEDVGD ESENNVQLDA LKALAYEGEP  60
   61 HEVAQNFREH GNECFASKRY KDAEEFYTKA LAQKCGDKDI EIACYSNRAA CNLLFENYRQ 120
  121 VLNDCAQVLQ RDSTHAKAYY RSAKALVALK RYDEAKECIR LCSLVHPNDP AILALSKELQ 180
  181 KKSDDFEKRE SEKKRVAQEK VIAAKTVLLA LQERHIKTKT TEHPPDLGDA MISLSTFDDP 240
  241 KSELFFPTIL LYPLVYQSDF VPSVSENCTP LELLKTVFQS PAPWDVHQLY NPDSLDVFAT 300
  301 TDTLGLIKVG KNVPILKALT HPKVTLIDGL VQLHVVPHHL ASDWISSWKK NKQENAKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits