YRC Public Data Repository - Protein Structure Prediction

Protein:	rem1
Organism:	Schizosaccharomyces pombe
Length:	402 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rem1.

Description	E-value	Query Range	Subject Range
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	336.0	[0..5]	[397..143]
gi\|60655945 - gi\|60655945\|gb\|AAX32536.1\| cyclin B1 [synthetic construct]	332.0	[0..5]	[397..40]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1 gi\|123990181 - gi\|123990181\|gb\|ABM83901.1\| cyclin B1 [synthetic construct]	332.0	[0..5]	[397..40]
gi\|109077473 - gi\|109077473\|ref\|XP_001090925.1\| PREDICTED: cyclin B1 isoform 1 [Macaca mulatta]	330.0	[0..5]	[397..20]
CCNB1_MESAU - G2/mitotic-specific cyclin-B1 OS=Mesocricetus auratus GN=CCNB1 PE=2 SV=1	329.0	[0..5]	[396..40]
gi\|51762951 - gi\|51762951\|ref\|XP_485921.1\| PREDICTED: similar to cyclin B1 isoform 1 [Mus musculus]	329.0	[0..5]	[396..40]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNNKRVAL QEISNYVSKS LNVKGWVNAQ VREISLQNGC SPSDKHFPSQ SWHGISSIEE  60
   61 SQIQKDYDSF LASPLEEEIV FTEKQLLVDL DVCSISNVQS PNCSVSEFGI AIEESNDNCA 120
  121 EEDEEEELQM RYSADESVSV EYAKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILSHMEKLEI RFMPDYRHMS AQPYYVTEMR ASVINWIVGV HTCINLLPES LFLSINVLDR  60
   61 FLSLQNVPAS KMKLCGATAL FIACKYEEIH PPTVKDLEIV LEGEWIGEDI CGMEKYMLMV 120
  121 LQYQLGWPGP VSFLRLLTIV NKWESQLRIM IKYFLEVSLV EQRFSSLRAS QLVATCAYTG 180
  181 QSILQEENWS NTLPQITGYD YMSLVSYVHL LLKCLENPFD HHYAIYSKYA TPYFHGISRQ 240
  241 VHDWIATNTN LMAMDGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits