YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC23G7.07c
Organism:	Schizosaccharomyces pombe
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC23G7.07c.

Description	E-value	Query Range	Subject Range
gi\|93355370, gi\|... - gi\|94311518\|ref\|YP_584728.1\| DEAD/DEAH box helicase-like protein [Ralstonia metallidurans CH34], gi\|...	229.0	[0..77]	[274..73]
gi\|73540223, gi\|... - gi\|73540223\|ref\|YP_294743.1\| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH...	227.0	[0..78]	[272..2]
gi\|33863354, gi\|... - gi\|33863354\|ref\|NP_894914.1\| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9...	227.0	[0..1]	[272..20]
gi\|33594279, gi\|... - gi\|33594279\|ref\|NP_881923.1\| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I], gi...	226.0	[0..67]	[272..7]
gi\|83746502, gi\|... - gi\|83746502\|ref\|ZP_00943553.1\| ATP-dependent RNA helicase [Ralstonia solanacearum UW551], gi\|8372683...	226.0	[0..72]	[273..81]
gi\|33566623 - gi\|33566623\|emb\|CAE38832.1\| putative ATP-dependent RNA helicase [Bordetella parapertussis] gi\|33598065 - gi\|33598065\|ref\|NP_885708.1\| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822]	226.0	[0..67]	[272..7]
gi\|76578229, gi\|... - gi\|76808776\|ref\|YP_332762.1\| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]...	225.0	[0..59]	[273..73]
gi\|94492419, gi\|... - gi\|94492419\|ref\|ZP_01299627.1\| hypothetical protein CburD_01000751 [Coxiella burnetii Dugway 7E9-12]... gi\|161762309, gi... - gi\|95927929\|ref\|ZP_01310681.1\| hypothetical protein CburR_01000307 [Coxiella burnetii RSA 331], gi\|1... gi\|29541274, gi\|... - gi\|29654008\|ref\|NP_819700.1\| ATP-dependent RNA helicase RhlE, putative [Coxiella burnetii RSA 493], ... gi\|120576665, gi... - gi\|153207356\|ref\|ZP_01946093.1\| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU Goa... gi\|165917853, gi... - gi\|165918485\|ref\|ZP_02218571.1\| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 334]...	225.0	[0..78]	[272..2]
gi\|83720702, gi\|... - gi\|83720702\|ref\|YP_441535.1\| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264], gi\|8...	225.0	[0..59]	[273..86]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYTTTDADA LDDQLDYQVD LVSEISVSDE ESAQPTTITE NFTASQNNDS AKREKRKKQR  60
   61 QKQKERKRAK LLELQDTNAS IIQSPDTLSD LLNNYIKSIY SDLTDVELSD KVIKASYIED 120
  121 TISFSKPKTV DNYPEYIQHL PGFTKKVVQN SNPEILVLCI SALRAIDVLK PTKSLQNKNF 180
  181 KVAKLFGKHI RLEEHINYCK ANKIGVGIGT TPRIAQLTNE CFTCENLKYI ILDYSFRDIK 240
  241 NNSILTSKES RKAVIDFLTS KTILENMAER KTKICFY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	2pl3A
Description:	No description for 2pl3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits