YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC29B12.13
Organism:	Schizosaccharomyces pombe
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC29B12.13.

Description	E-value	Query Range	Subject Range
gi\|14021154, gi\|... - gi\|14021154\|dbj\|BAB47767.1\| mlr0112 [Mesorhizobium loti MAFF303099], gi\|13470413\|ref\|NP_101981.1\| hy...	147.0	[0..1]	[131..1]
gi\|27379022, gi\|... - gi\|27379022\|ref\|NP_770551.1\| hypothetical protein bll3911 [Bradyrhizobium japonicum USDA 110], gi\|27...	140.0	[0..3]	[127..2]
gi\|25520984, gi\|... - pir\|\|AF2708 conserved hypothetical protein Atu1071 [imported] - Agrobacterium tumefaciens (strain C5... gi\|15156100, gi\|... - gi\|17934978\|ref\|NP_531768.1\| hypothetical protein Atu1071 [Agrobacterium tumefaciens str. C58], gi\|1...	138.0	[0..1]	[135..1]
gi\|71734097, gi\|... - gi\|71734097\|ref\|YP_272492.1\| hypothetical protein PSPPH_0187 [Pseudomonas syringae pv. phaseolicola ...	134.0	[0..2]	[131..3]
gi\|28850537, gi\|... - gi\|28867303\|ref\|NP_789922.1\| hypothetical protein PSPTO_0063 [Pseudomonas syringae pv. tomato str. D... tr\|Q88BF4\|Q88BF4... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0063 PE=4 SV=1	134.0	[0..2]	[130..3]
gi\|110633322, gi... - gi\|69279706\|ref\|ZP_00614512.1\| Glutathione-dependent formaldehyde-activating, GFA [Mesorhizobium sp....	133.0	[0..2]	[132..7]
gi\|146406637, gi... - gi\|78695642\|ref\|ZP_00860153.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851620...	133.0	[0..2]	[136..7]
gi\|66043469, gi\|... - gi\|66043469\|ref\|YP_233310.1\| glutathione-dependent formaldehyde-activating, GFA [Pseudomonas syringa...	133.0	[0..2]	[131..3]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEYEGNCLC KAIHLKAIIE EPKLSCCHCE TCRIWCSSPF MAFSCTQKPS VSENENVGKY  60
   61 ASSSFAERIF CKNCGTTLYF AYTNGKNPYF INAWLFKGIE NITFDAQVCI DDKPDCYDFA 120
  121 NKTSMFTVDE VMKSIVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	1x6mA
Description:	Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits