YRC Public Data Repository - Protein Structure Prediction

Protein:	qcr10
Organism:	Schizosaccharomyces pombe
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for qcr10.

Description	E-value	Query Range	Subject Range
gi\|85107986 - gi\|85107986\|ref\|XP_962486.1\| hypothetical protein NCU07328 [Neurospora crassa OR74A] gi\|28924093, gi\|... - gi\|32414269\|ref\|XP_327614.1\| hypothetical protein [Neurospora crassa], gi\|28924093\|gb\|EAA33250.1\| pr...	107.0	[0..6]	[77..17]
gi\|38106918, gi\|... - gi\|39972269\|ref\|XP_367525.1\| hypothetical protein MG07436.4 [Magnaporthe grisea 70-15], gb\|EAA53159....	107.0	[0..7]	[77..19]
gi\|46136303, gi\|... - gi\|46136303\|ref\|XP_389843.1\| hypothetical protein FG09667.1 [Gibberella zeae PH-1], gi\|42554873\|gb\|E...	104.0	[0..7]	[77..8]
gi\|40738528, gi\|... - gi\|67539598\|ref\|XP_663573.1\| hypothetical protein AN5969.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	96.0	[0..6]	[78..18]
gi\|2351226 - gi\|2351226\|gb\|AAB68434.1\| Qcr10p: 8.5 kDa subunit of the quinol cytochrome oxidoreductase complex [S...	91.0	[0..16]	[77..17]
gi\|44985807 - gi\|44985807\|gb\|AAS54431.1\| AGL059Cp [Ashbya gossypii ATCC 10895] gi\|45201037, gi\|... - gi\|45201037\|ref\|NP_986607.1\| AGL059Cp [Ashbya gossypii ATCC 10895], gi\|44985807\|gb\|AAS54431.1\| AGL05...	80.0	[0..17]	[76..3]
gi\|88179924, gi\|... - gi\|88179924\|gb\|EAQ87392.1\| hypothetical protein CHGG_04011 [Chaetomium globosum CBS 148.51], gi\|1161...	80.0	[0..6]	[77..19]
gi\|169783462 - gi\|169783462\|ref\|XP_001826193.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774937 - gi\|83774937\|dbj\|BAE65060.1\| unnamed protein product [Aspergillus oryzae]	78.0	[0..10]	[77..4]
gi\|49643710, gi\|... - gi\|50309139\|ref\|XP_454575.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643710\|emb\|CAG9966... gi\|49643710 - gi\|49643710\|emb\|CAG99662.1\| KLLA0E13839p [Kluyveromyces lactis]	77.0	[0..16]	[76..15]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISFFPNKPM YHVQPHISFI TPERTMKTIP AFSRWAFAAV AGVFVFAMQV PKVKTTILQP  60
   61 IAFIGDHFKD KTPEEDKWL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	1l0lK
Description:	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits