YRC Public Data Repository - Protein Structure Prediction

Protein:	spc24
Organism:	Schizosaccharomyces pombe
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spc24.

Description	E-value	Query Range	Subject Range
gi\|69275230, gi\|... - gi\|69275230\|ref\|ZP_00611142.1\| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histi...	142.0	[0..8]	[195..242]
gi\|17228616, gi\|... - gi\|17228616\|ref\|NP_485164.1\| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120], gi\|171... gi\|25532869 - pir\|\|AF1946 two-component hybrid sensor and regulator alr1121 [imported] - Nostoc sp. (strain PCC 71...	137.0	[0..2]	[195..1128]
gi\|75910892, gi\|... - gi\|75910892\|ref\|YP_325188.1\| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413], gi...	136.0	[0..2]	[195..1128]
gi\|23123968 - gi\|23123968\|ref\|ZP_00105990.1\| COG2770: FOG: HAMP domain [Nostoc punctiforme PCC 73102]	134.0	[0..2]	[195..1404]
gi\|108460885, gi... - gi\|108757005\|ref\|YP_628980.1\| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622...	134.0	[0..2]	[195..1145]
gi\|116196504, gi... - gi\|88180763\|gb\|EAQ88231.1\| hypothetical protein CHGG_04850 [Chaetomium globosum CBS 148.51], gi\|1161...	133.0	[0..1]	[191..3]
gi\|94497919, gi\|... - gi\|94497919\|ref\|ZP_01304484.1\| two-component system sensor protein [Sphingomonas sp. SKA58], gi\|9442...	131.0	[0..19]	[174..252]
gi\|113933675, gi... - gi\|167647510\|ref\|YP_001685173.1\| GAF sensor hybrid histidine kinase [Caulobacter sp. K31], gi\|167349...	131.0	[0..3]	[195..1126]
gi\|37520204, gi\|... - gi\|37520204\|ref\|NP_923581.1\| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 74...	130.0	[0..2]	[195..579]
gi\|23014940 - gi\|23014940\|ref\|ZP_00054733.1\| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS...	126.0	[0..31]	[195..414]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSPIELMR STLAGFQIAP DVKTISNIQD IRAQIQSFRE KELEGSQTKF KVLSRKLEIS  60
   61 TQAMESLKQT AESSQHAEEI LSREKEKFRI AKLLNITENE IMSLESQLQK MKEQLLQLEE 120
  121 RENTSEDICQ SEENANMLKL NFYHSLGFDL ETAENTGNKR VIIHTENDLQ TVQISNKYSP 180
  181 YFYSNYFWDL LDDSKDKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits