YRC Public Data Repository - Protein Structure Prediction

Protein:	mvp1
Organism:	Schizosaccharomyces pombe
Length:	664 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mvp1.

Description	E-value	Query Range	Subject Range
gi\|42545121, gi\|... - gi\|46111669\|ref\|XP_382892.1\| hypothetical protein FG02716.1 [Gibberella zeae PH-1], gi\|42545121\|gb\|E...	312.0	[0..3]	[663..439]
gi\|38111020, gi\|... - gi\|39977451\|ref\|XP_370113.1\| hypothetical protein MG06628.4 [Magnaporthe grisea 70-15], gb\|EAA56657....	292.0	[0..9]	[664..53]
MVP1_ASPFU - Sorting nexin mvp1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) ... MVP1_ASPFU - Sorting nexin mvp1 OS=Aspergillus fumigatus GN=mvp1 PE=3 SV=1	290.0	[0..3]	[663..52]
gi\|28394447 - gi\|28394447\|gb\|AAM08674.1\| Mvp1p [Aspergillus fumigatus]	289.0	[0..3]	[663..52]
MVP1_ASPOR - Sorting nexin mvp1 OS=Aspergillus oryzae GN=mvp1 PE=3 SV=1 MVP1_ASPOR - Sorting nexin mvp1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=mvp1 PE=3 SV=1	270.0	[0..3]	[663..48]
gi\|85109406 - gi\|85109406\|ref\|XP_962901.1\| hypothetical protein [Neurospora crassa OR74A] MVP1_NEUCR - Sorting nexin mvp-1 - Neurospora crassa	267.0	[0..5]	[663..46]
gi\|115385567, gi... - gi\|115385567\|ref\|XP_001209330.1\| hypothetical protein ATEG_10028 [Aspergillus terreus NIH2624], gi\|1...	263.0	[0..5]	[663..49]
gi\|49106010, gi\|... - gi\|67900524\|ref\|XP_680518.1\| hypothetical protein AN7249.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	257.0	[0..4]	[663..1198]
gi\|90298565, gi\|... - gi\|90298565\|gb\|EAS28196.1\| hypothetical protein CIMG_09400 [Coccidioides immitis RS], gi\|119174917\|r...	257.0	[0..3]	[664..442]
MVP1_USTMA - Sorting nexin MVP1 OS=Ustilago maydis GN=MVP1 PE=3 SV=1 MVP1_USTMA - Sorting nexin MVP1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MVP1 PE=3 SV=1	247.0	[0..11]	[662..15]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDNVFLEPD PWASSSNWGS PVKPLNYKTA IGNSSIPLQY RNYWDVFQAN NVLLFPEEES  60
   61 YSDIFHVPQD VMKEFFTLIE SSSNQPLRQI QFFVLLALVA CYQLGVPSTL EQIFKQRNVL 120
  121 PILQRFNPEL FNRSSDNETP LFPNNSPPAS TTA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.12
Match:	2qptA
Description:	No description for 2qptA was found.

Predicted Domain #2

Region A:
Residues: [154-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLSSNIVPS INESKILEQE DDDVSNKSLP HAQQSIIRSF PDIQKQPKGF FSYPSSTVSS  60
   61 IAPSTLEAGN LHSQQPPKFS VDSSVDDNAI TPRKPFSKIP NRLSPSTQPL LSNSRHSSFR 120
  121 LASSSTSFPA SLEMNVDIDL EPSGYFFYRH NNYIISDSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [313-664]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTREVLRRYS DFFWLHSYLM KKYPFRRVPL IPLKKFHSKC FNSKQFFRTP PPGLSDFVND  60
   61 LSHHPIFSND EVVRVFFTEP NVFKNWRREN QKRIDQEIEQ FLVVPQSQVP DASETVKERL 120
  121 LKLNMSTTTA INNQLNIFRI FEKMIFTLQH FHEDFLRLQN SFNCLLDSGL YHQVFTSTFA 180
  181 QNESKIMSMA SGHFYNIDSL LHQQNDAVKH TFLLGLSKEI KILISLRLLI ERISEVFSTD 240
  241 LTKVRHTISN DENLLRETAN SDESGRNRTF LNRSSKKRAE NSLKSKKELY LKNLNQRYQI 300
  301 AHELEQELSY LQDYVFSLGN PYVEYCKQHV KLEEESLKIW HTLESDFSRL ET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits