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View Structure Prediction Details

Protein: SPBC1347.08c
Organism: Schizosaccharomyces pombe
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1347.08c.

Description E-value Query
Range
Subject
Range
RNH2B_RAT - Ribonuclease H2 subunit B OS=Rattus norvegicus GN=Rnaseh2b PE=2 SV=1
gi|55741512 - ref|NP_001007008.1| similar to hypothetical protein FLJ11712 [Rattus norvegicus]
284.0 [0..2] [293..13]
gi|114649741 - gi|114649741|ref|XP_001158221.1| PREDICTED: similar to DLEU8 protein isoform 3 [Pan troglodytes]
271.0 [0..2] [293..14]
gi|29126931 - gi|29126931|gb|AAH47997.1| Ribonuclease H2, subunit B [Mus musculus]
270.0 [0..2] [293..13]
RNASEH2B - ribonuclease H2, subunit B
269.0 [0..2] [293..14]
gi|109120792 - gi|109120792|ref|XP_001105134.1| PREDICTED: similar to CG11164-PA isoform 1 [Macaca mulatta]
268.0 [0..2] [293..14]
gi|73587127 - gi|73587127|gb|AAI03281.1| RNASEH2B protein [Bos taurus]
249.0 [0..3] [293..80]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGKIFILPK DSTNQQFVEL SHPLTGRPLR YLLTNDHLLQ ILQVGDSSKQ RSWFVGDHVV  60
   61 SDGYLYVCTP IDLLALVLPI IQELT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSRRKEPNRY VSFEDFIEHF DNMGPHYPRV SEVLSPNLLN TLHRICKVNE PVGSLPKTFQ  60
   61 LDESSVVKIL LRKAKVAQEN LPPSIVTELK KQLAPLDLRT PLPQDLLELS CKWHAASLVC 120
  121 EDLQPEWYNK LAYWQEELAP LHAYTKNLEE SRKILVEKEA LLNSKKRPQN SDITSSLLKK 180
  181 PNRKQATKKS KYFSGEGMTK ISSFFTKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle