YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1450.07c
Organism:	Schizosaccharomyces pombe
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1450.07c.

Description	E-value	Query Range	Subject Range
gi\|47564662, gi\|... - gi\|47564662\|ref\|ZP_00235706.1\| oxidoreductase, FAD-binding, putative [Bacillus cereus G9241], gi\|475...	181.0	[0..6]	[346..3]
gi\|65318156, gi\|... - gi\|65318156\|ref\|ZP_00391115.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Bacillus anthra... gi\|190560101, gi... - gi\|190568864\|ref\|ZP_03021767.1\| glycine oxidase ThiO [Bacillus anthracis Tsiankovskii-I], gi\|1905601... gi\|254757122 - gi\|254757122\|ref\|ZP_05209150.1\| glycine oxidase ThiO [Bacillus anthracis str. Australia 94] gi\|172080561, gi... - gi\|177654747\|ref\|ZP_02936535.1\| glycine oxidase ThiO [Bacillus anthracis str. A0174], gi\|172080561\|g... gi\|49177647, gi\|... - gi\|49183720\|ref\|YP_026972.1\| glycine oxidase [Bacillus anthracis str. Sterne], gi\|49177647\|gb\|AAT530... gi\|47526014, gi\|... - gi\|47526014\|ref\|YP_017363.1\| glycine oxidase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47501162\|... gi\|30260878, gi\|... - gi\|30260878\|ref\|NP_843255.1\| glycine oxidase [Bacillus anthracis str. Ames], gi\|30254327\|gb\|AAP24741... gi\|167635997, gi... - gi\|167635997\|ref\|ZP_02394304.1\| glycine oxidase ThiO [Bacillus anthracis str. A0442], gi\|167528669\|g... gi\|164711780, gi... - gi\|165872455\|ref\|ZP_02217089.1\| glycine oxidase ThiO [Bacillus anthracis str. A0488], gi\|164711780\|g... gi\|170666914, gi... - gi\|170689166\|ref\|ZP_02880364.1\| glycine oxidase ThiO [Bacillus anthracis str. A0465], gi\|170666914\|g... gi\|167510691, gi... - gi\|167641300\|ref\|ZP_02399552.1\| glycine oxidase ThiO [Bacillus anthracis str. A0193], gi\|167510691\|g... gi\|227006963, gi... - gi\|227816398\|ref\|YP_002816407.1\| glycine oxidase ThiO [Bacillus anthracis str. CDC 684], gi\|22700696... gi\|229268875, gi... - gi\|229604467\|ref\|YP_002865325.1\| glycine oxidase ThiO [Bacillus anthracis str. A0248], gi\|229268875\|... gi\|254683069 - gi\|254683069\|ref\|ZP_05146930.1\| glycine oxidase ThiO [Bacillus anthracis str. CNEVA-9066] gi\|254725856 - gi\|254725856\|ref\|ZP_05187638.1\| glycine oxidase ThiO [Bacillus anthracis str. A1055] gi\|254735039 - gi\|254735039\|ref\|ZP_05192750.1\| glycine oxidase ThiO [Bacillus anthracis str. Western North America ... gi\|254739869 - gi\|254739869\|ref\|ZP_05197561.1\| glycine oxidase ThiO [Bacillus anthracis str. Kruger B] gi\|254753208 - gi\|254753208\|ref\|ZP_05205244.1\| glycine oxidase ThiO [Bacillus anthracis str. Vollum]	180.0	[0..6]	[345..3]
gi\|163860849, gi... - gi\|89207102\|ref\|ZP_01185650.1\| FAD dependent oxidoreductase [Bacillus weihenstephanensis KBAB4], gi\|...	180.0	[0..6]	[345..3]
gi\|42779877, gi\|... - gi\|42779877\|ref\|NP_977124.1\| glycine oxidase [Bacillus cereus ATCC 10987], gi\|42735794\|gb\|AAS39732.1...	179.0	[0..6]	[345..3]
gi\|52144583, gi\|... - gi\|52144583\|ref\|YP_082245.1\| glycine oxidase [Bacillus cereus E33L], gi\|51978052\|gb\|AAU19602.1\| glyc...	179.0	[0..6]	[345..3]
gi\|88925520, gi\|... - gi\|88944849\|ref\|ZP_01148072.1\| proline dehydrogenase, beta subunit [Desulfotomaculum reducens MI-1],...	178.0	[0..6]	[344..3]
gi\|49331837, gi\|... - gi\|49480281\|ref\|YP_034985.1\| glycine oxidase [Bacillus thuringiensis serovar konkukian str. 97-27], ...	178.0	[0..6]	[345..3]
gi\|29894448, gi\|... - gi\|30018906\|ref\|NP_830537.1\| glycine oxidase [Bacillus cereus ATCC 14579], gi\|29894448\|gb\|AAP07738.1...	178.0	[0..6]	[345..3]
gi\|89203239, gi\|... - gi\|89203239\|ref\|ZP_01181927.1\| FAD dependent oxidoreductase [Bacillus cereus subsp. cytotoxis NVH 39...	175.0	[0..5]	[345..2]
gi\|121631459, gi... - gi\|75816836\|ref\|ZP_00747295.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Vibrio cholerae...	175.0	[0..9]	[347..3]

Back

Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKENKPRDI VIVGAGVIGL TTAWILSDLG LAPRIKVIAK YTPEDRSVEY TSPWAGANFC  60
   61 SISATDDNAL RWDKITYHRF AYLAKTRPEA GIRFADLREL WEYEPKHDKI RSWNTYVRDF 120
  121 KVIPEKDLPG ECIYGHKATT FLINAPHYLN YMYKLLIEAG VEFEKKELSH IKETVEETPE 180
  181 ASVVFNCTGL WASKLGGVED PDVYPTRGHV VLVKAPHVTE TRILNGKNSD TYIIPRPLNG 240
  241 GVICGGFMQP GNWDREIHPE DTLDILKRTS ALMPELFHGK GPEGAEIIQE CVGFRPSRKG 300
  301 GARVELDVVP GTSVPLVHDY GASGTGYQAG YGMALDSVML ALPKIKLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1c0iA
Description:	D-aminoacid oxidase, N-terminal domain; D-aminoacid oxidase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits