YRC Public Data Repository - Protein Structure Prediction

Protein:	fub2
Organism:	Schizosaccharomyces pombe
Length:	628 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fub2.

Description	E-value	Query Range	Subject Range
gi\|76641001 - gi\|76641001\|ref\|XP_583543.2\| PREDICTED: similar to Ubiquitin-like 1 activating enzyme E1B (SUMO-1 ac...	491.0	[0..21]	[627..250]
SAE2_MOUSE - SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=1 SV=1	482.0	[0..21]	[628..13]
gi\|11360042, gi\|... - gi\|7018436\|emb\|CAB66839.1\| hypothetical protein [Homo sapiens], pir\|\|T46936 hypothetical protein DKF...	482.0	[0..21]	[627..13]
gi\|109461722, gi... - gi\|197384571\|ref\|NP_001094049.1\| ubiquitin-like modifier activating enzyme 2 [Rattus norvegicus], gi...	481.0	[0..18]	[628..10]
gi\|109124297 - gi\|109124297\|ref\|XP_001091974.1\| PREDICTED: SUMO-1 activating enzyme subunit 2 isoform 7 [Macaca mul...	479.0	[0..21]	[627..13]

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Predicted Domain #1

Region A:
Residues: [1-628]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLMQLSND MKPLTFVEAL RNFKSAKVLL VGAGGIGCEL LKNLLMSGVK EVHIIDLDTI  60
   61 DLSNLNRQFL FRKKHVKQPK AIVAAKTASS FNPNVKLEAY HANIKEDRFN VAWFRQFDLV 120
  121 FNALDNLDAR RHVNKQCLLA SVPLIESGTT GFLGQVQVII HGKTECYDCN PKEPPKTYPV 180
  181 CTIRSTPSQP IHCVVWAKSY FFPQLFSNDQ ESDGIIDNVS ANEMERREIA ELARETTELN 240
  241 ELRSSIGQSD NGFEKIFTKM FTKDIVRLRE VPDAWTYRSP PKELSYSELL ENAEKATSPW 300
  301 LNEQNVWNVA ESFAVLRDSI RRLALRSKSS KDDLSFDKDD KDTLDFVAAA ANLRAHVFGI 360
  361 QQLSEFDIKQ MAGNIIPAIA TTNAVIAGLC ITQAIKVLQG DLNDLKNIYL AKRPTRVLHC 420
  421 EKTCKPNPYC PTCSFVLLQL GVNDKNMTLR VLVDDILKSR LHYSEEVSVL NDKLIYDPDF 480
  481 DDNLDKTFDD LGINPAKNTI LTVLGDSAVE KDDDGEEATR VPLLIEVTFI DSNSTEGLPY 540
  541 QILSNATSIP LKQQPPSNSP EDSQVLTDEI NEVNDFSSSE RIVINLDEYD IIVDSKTSSH 600
  601 NKQLKRRPSN DTLTQEAKSK KQAKIHTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.0
Match:	1y8qB
Description:	SUMO E1 ACTIVATING ENZYME SAE1-SAE2-MG-ATP COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits