YRC Public Data Repository - Protein Structure Prediction

Protein:	vps24
Organism:	Schizosaccharomyces pombe
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps24.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	194.0	[0..3]	[222..580]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	163.0	[0..3]	[222..247]
gi\|50736119 - gi\|50736119\|ref\|XP_419052.1\| PREDICTED: similar to HSPC177 [Gallus gallus]	158.0	[0..1]	[199..93]
gi\|58270340, gi\|... - gi\|58270340\|ref\|XP_572326.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g... gi\|134117768, gi... - gi\|50255132\|gb\|EAL17871.1\| hypothetical protein CNBL1330 [Cryptococcus neoformans var. neoformans B-...	146.0	[0..1]	[230..64]
gi\|70997117, gi\|... - gi\|70997117\|ref\|XP_753313.1\| SNF7 family protein [Aspergillus fumigatus Af293], gi\|66850949\|gb\|EAL91...	142.0	[0..1]	[230..1]
gi\|240106962 - gi\|240106962\|gb\|EER25149.1\| SNF7 family protein [Coccidioides posadasii C735 delta SOWgp] gi\|119174847, gi... - gi\|90298537\|gb\|EAS28168.1\| hypothetical protein CIMG_09372 [Coccidioides immitis RS], gi\|119174847\|r...	141.0	[0..1]	[230..1]
gi\|115710063, gi... - gi\|115710063\|ref\|XP_781609.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	140.0	[0..2]	[231..56]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTVRSYFFG PTPQEQNRKW QSIIRKEQRQ LDRQVYHLKA GRKKAEVQLK QLAKQSDITN  60
   61 MRILAKEIAR ANRHGKRLAE SKALLGSLSL QLNDQMAMLK IQGTMQSSTK IMQDVSSLIR 120
  121 LPQLSETMRN LSMELTKAGV LEEMRDEMFL PVEDDEELMD LADEDEEVQE ILTKYNVIPA 180
  181 PSEKAADAAT HREQSLKQAL PSLSNGIAKD STEIDEEQLL DIRDKLDALK S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits