YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1B2.03c
Organism:	Schizosaccharomyces pombe
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B2.03c.

Description	E-value	Query Range	Subject Range
gi\|32413000, gi\|... - gi\|32413000\|ref\|XP_326980.1\| hypothetical protein [Neurospora crassa], gi\|28949932\|emb\|CAD70918.1\| p... gi\|85100677 - gi\|85100677\|ref\|XP_961009.1\| elongation of fatty acids protein 3 [Neurospora crassa OR74A]	325.0	[0..10]	[333..12]
gi\|40740549, gi\|... - gi\|67902260\|ref\|XP_681386.1\| hypothetical protein AN8117.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	310.0	[0..6]	[333..2]
gi\|46125939, gi\|... - gi\|46125939\|ref\|XP_387523.1\| hypothetical protein FG07347.1 [Gibberella zeae PH-1], gi\|42553116\|gb\|E...	309.0	[0..10]	[333..11]
gi\|44985282 - gi\|44985282\|gb\|AAS53995.1\| AFR624Wp [Ashbya gossypii ATCC 10895] gi\|45199142, gi\|... - gi\|45199142\|ref\|NP_986171.1\| AFR624Wp [Ashbya gossypii ATCC 10895], gi\|44985282\|gb\|AAS53995.1\| AFR62...	308.0	[0..7]	[333..17]
gi\|116199203, gi... - gi\|88179036\|gb\|EAQ86504.1\| hypothetical protein CHGG_07757 [Chaetomium globosum CBS 148.51], gi\|1161...	307.0	[0..6]	[330..9]
gi\|73973376 - gi\|73973376\|ref\|XP_852962.1\| PREDICTED: similar to homolog of yeast long chain polyunsaturated fatty...	307.0	[0..22]	[331..171]
gi\|145019784, gi... - gi\|39971929\|ref\|XP_367355.1\| hypothetical protein MGG_07280 [Magnaporthe grisea 70-15], gb\|EAA56925....	301.0	[0..10]	[333..7]
gi\|119182974, gi... - gi\|90301364\|gb\|EAS30995.1\| hypothetical protein CIMG_06474 [Coccidioides immitis RS], gi\|119182974\|r...	299.0	[0..8]	[330..6]
gi\|70985120, gi\|... - gi\|70985120\|ref\|XP_748066.1\| fatty acid elongase (Gns1) [Aspergillus fumigatus Af293], gi\|66845694\|g... gi\|159126011 - gi\|159126011\|gb\|EDP51127.1\| fatty acid elongase (Gns1), putative [Aspergillus fumigatus A1163]	297.0	[0..6]	[333..4]
gi\|50744984 - gi\|50744984\|ref\|XP_426204.1\| PREDICTED: similar to fatty acid elongase 1 [Gallus gallus]	295.0	[0..24]	[331..546]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTGAHMLK IHRPSIDHPF GVDLWHLFEQ LSIKTIGWNP SEFEYIPGKT PMSQWSSVIV  60
   61 SITAYYVIIL SGRAIMTNRK PLKQRRLFQL HNFILTIISG ALLALLVEEV FRNYMRNGLF 120
  121 YCVCD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRHFTQRLVT LYYLNYLTKY LELMDTVFLF LKKKPLAFLH CYHHGITALL CFTQLLGRTS  60
   61 VQWGVIGLNL YVHVIMYSYY FLAACGRRVW WKQWVTRVQI IQFVLDLILC YFGTYSHIAF 120
  121 RYFPWLPHVG DCSGSLFAAF FGCGVLSSYL FLFIGFYINT YIKRGAKKNQ RKAAGKADNT 180
  181 SVAAAAGSEA LAATTATNAS PFSARSRKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits