YRC Public Data Repository - Protein Structure Prediction

Protein:	mdm10
Organism:	Schizosaccharomyces pombe
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdm10.

Description	E-value	Query Range	Subject Range
MDM10_MAGGR - Mitochondrial distribution and morphology protein 10 OS=Magnaporthe grisea GN=MDM10 PE=3 SV=1 MDM10_MAGO7 - Mitochondrial distribution and morphology protein 10 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-...	506.0	[0..1]	[369..1]
MDM10_PODAN - Mitochondrial distribution and morphology protein 10 OS=Podospora anserina (strain S / ATCC MYA-4624... MDM10_PODAN - Mitochondrial distribution and morphology protein 10 OS=Podospora anserina GN=MDM10 PE=3 SV=1	486.0	[0..1]	[369..1]
gi\|42544594, gi\|... - gi\|46111417\|ref\|XP_382766.1\| hypothetical protein FG02590.1 [Gibberella zeae PH-1], gi\|42544594\|gb\|E...	483.0	[0..1]	[369..1]
gi\|32416104, gi\|... - gi\|32416104\|ref\|XP_328530.1\| hypothetical protein [Neurospora crassa], gi\|28924590\|gb\|EAA33709.1\| hy... gi\|85109496 - gi\|85109496\|ref\|XP_962945.1\| hypothetical protein [Neurospora crassa OR74A]	456.0	[0..1]	[369..1]
MDM10_PHANO - Mitochondrial distribution and morphology protein 10 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MY... MDM10_PHANO - Mitochondrial distribution and morphology protein 10 OS=Phaeosphaeria nodorum GN=MDM10 PE=3 SV=1	448.0	[0..1]	[369..1]
MDM10 - Subunit of both the ERMES complex that links the ER to mitochondria, and of the mitochondrial sortin... MDM10_YEAST - Mitochondrial distribution and morphology protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508...	440.0	[0..1]	[313..1]
MDM10_CANAL - Mitochondrial distribution and morphology protein 10 OS=Candida albicans (strain SC5314 / ATCC MYA-2... MDM10_CANAL - Mitochondrial distribution and morphology protein 10 OS=Candida albicans GN=MDM10 PE=3 SV=1	416.0	[0..1]	[302..1]
MDM10_ASHGO - Mitochondrial distribution and morphology protein 10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109... MDM10_ASHGO - Mitochondrial distribution and morphology protein 10 OS=Ashbya gossypii GN=MDM10 PE=3 SV=1	399.0	[0..1]	[317..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFNDYIFY EYLKKTNWNI HNLYCNLTQT ADNILNFEIP SGVSCQLSSL TSSNFASGCK  60
   61 ISAMPILNGS MSYVYTNVNL ENLNRNITYN LQHFYEGYKH VDVPFVHYVN EFQDKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPLRPTLLYG RMHLPSQHLD AIFATRLSPW LLFFIQGVNE IEDGVGDNLC FNWQYDTGKR  60
   61 CLEFVYESSG AMLGVRGLWN LNYRELNTKI NMENKAPSNM RWSLGFETYY GVLTKCAGAS 120
  121 LGMRLHSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [245-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSHPYAPFIL TCTLNPIVGH ITSTFSTAEP RTKAFSAQYD FNIYSYESQL KLGIELWRSK  60
   61 QEMSQSTNDP TANSMSSLLK GTCSTSGDVS ISWQARIRNF LLTIGTEAQL TKIDPLFFGV 120
  121 HFEYSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits