YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC323.07c
Organism:	Schizosaccharomyces pombe
Length:	533 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC323.07c.

Description	E-value	Query Range	Subject Range
gi\|113548993, gi... - gi\|115453843\|ref\|NP_001050522.1\| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi\|113548993...	309.0	[0..12]	[530..566]
gi\|38105054, gi\|... - gi\|39942086\|ref\|XP_360580.1\| hypothetical protein MG03123.4 [Magnaporthe grisea 70-15], gb\|EAA51528....	306.0	[0..2]	[530..193]
gi\|42551894, gi\|... - gi\|46123591\|ref\|XP_386349.1\| hypothetical protein FG06173.1 [Gibberella zeae PH-1], gi\|42551894\|gb\|E...	285.0	[0..2]	[504..612]
gi\|382954 - gi\|382954\|prf\|\|1901324A ethionine resistance gene	284.0	[0..24]	[532..98]
gi\|30047775 - gi\|30047775\|gb\|AAH50592.1\| SLC47A1 protein [Homo sapiens]	267.0	[0..43]	[527..3]
gi\|21627817 - gi\|21627817\|emb\|CAD37149.1\| hypothetical protein [Aspergillus fumigatus] gi\|159124568 - gi\|159124568\|gb\|EDP49686.1\| MATE efflux family protein subfamily, putative [Aspergillus fumigatus A1... gi\|70992299, gi\|... - gi\|70992299\|ref\|XP_750998.1\| MATE efflux family protein subfamily [Aspergillus fumigatus Af293], gi\|...	265.0	[0..2]	[529..137]
gi\|49528705 - gi\|49528705\|emb\|CAG62367.1\| unnamed protein product [Candida glabrata] gi\|49528705, gi\|... - gi\|50293959\|ref\|XP_449391.1\| hypothetical protein CAGL0M01078g [Candida glabrata CBS138], gi\|4952870...	265.0	[0..82]	[527..218]
gi\|7267122, gi\|2... - pir\|\|T01536 hypothetical protein A_IG005I10.20 - Arabidopsis thaliana, gi\|7267122\|emb\|CAB80793.1\| A...	263.0	[0..33]	[523..19]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFFSKLFS KSPTSGRVPS PDSDYSEEEQ RLLAEENGYF QDSNEYVEPN IPAVYGSMIP  60
   61 VAQQLQQHHV HTPGESFADN ASGYPVIKHE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSELLRLGSP TVIAYLLQSS EQFSTVFTLG HLGKEYLAAS SLSTMTAAIS AFSIFQGVIS  60
   61 SLDTLATQAF GANKPYNVAI YLQRCLLILA VLHIPVALIW LNLEHILIFL HQDPMVAHLC 120
  121 GRYMRVFILA APGYAVFEAL KRYLQAQGIF TPITYVLCFA APLNILLNYL LVWHPTIGFG 180
  181 FLGAPVAVAT TFWFQSICLI LYICF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.920819
Match:	PF01554.9
Description:	No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [296-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTPIPWPGF SRQALKNLSP MLHFSFHGML MIVTEWAAYE MTSLGAGYLG TAPLASQSIL  60
   61 LTSTSLLFQI PFAFAVASST RVGHLIGSGR ANLARLCSRV AYSLALCISI FDGSLIFCFR 120
  121 DVWGSLFTSD PEVLAVVKDI FPILSLFIVT DGLNAVGGGL LRGTGKQYIG GLISIGSSYL 180
  181 FALPVTVFVV VYFNTGLKGI WCGMILSSVT AITCQFTVLF NTDWHRVLQE ARHRLTHV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.920819
Match:	PF01554.9
Description:	No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits