YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC29A3.11c
Organism:	Schizosaccharomyces pombe
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC29A3.11c.

Description	E-value	Query Range	Subject Range
gi\|46249805 - gi\|46249805\|gb\|AAH68561.1\| Solute carrier family 25 (mitochondrial carrier; phosphate carrier), memb...	257.0	[0..1]	[293..178]
gi\|114558229 - gi\|114558229\|ref\|XP_514375.2\| PREDICTED: solute carrier family 25 member 24 [Pan troglodytes]	257.0	[0..1]	[293..374]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	257.0	[0..1]	[293..159]
gi\|74215395 - gi\|74215395\|dbj\|BAE41903.1\| unnamed protein product [Mus musculus]	253.0	[0..1]	[293..178]
SCMC1_RABIT - Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1	253.0	[0..1]	[293..178]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPVHNQPH KAHSGSPAST FSAALVSSAI SNVIGYPLDS IKVRQQTYNF PTIRSCFQNA  60
   61 VKNEGLKGLY RGLTLPLISA TLSRSVSFTV YDSLKLTFAH VDPTLRYFIS GLGTGTFISL 120
  121 FACPFEYSKL YSQIDMLLRK TNMGRRQETN SKLSVRPPLS SFQSASDIVR RYGFTALWNG 180
  181 YRYHLTRDAL GSACYFTIYE TFKKNLIAND VKPHFAYAFS GAFCGALSWI LVFPVDTAKS 240
  241 IVQRNTLLSI KTPLSSIPWL SFTIYRGIGI SLMRSALINS CNFTLFELFR ETKVLSK

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Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits