YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1682.09c
Organism:	Schizosaccharomyces pombe
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1682.09c.

Description	E-value	Query Range	Subject Range
gi\|33598954 - gi\|33598954\|ref\|NP_037518.2\| solute carrier family 25 member 24 isoform 1 [Homo sapiens]	266.0	[0..3]	[295..185]
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	265.0	[0..6]	[295..358]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	265.0	[0..3]	[295..166]
gi\|74006830 - gi\|74006830\|ref\|XP_537947.2\| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide translo...	263.0	[0..6]	[295..174]
gi\|76672942 - gi\|76672942\|ref\|XP_877743.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 1 isof...	261.0	[0..3]	[295..185]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVQLKNKE SQTARIVGSA SAGILELSLF HPVDTISKRL MSNHGKITSL TQLNTVIFRD  60
   61 AASAPLLQKA TSLFPGLGYA ACYKIVQRIY KYSGQPIVKD FLNENYRHTF DKTFGKGSGK 120
  121 AIMHATAGSI VGIGEIFLLP LDVLKIKRQT NPAAFKGRGV FRILADEKFA LYRGWGWTAA 180
  181 RNAPGSFALF GGNAFAKEYI FKLKDYSQAT FFQNFFTSIA GASASLIVSA PLDVIKTRIQ 240
  241 NKNFDNPQSG FTILKNMLKF EGPTSFFKGL TPKLLTTGPK LVFSFTMAQT LIPFFDKLLK 300
  301

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Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits