YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1296.05c
Organism:	Schizosaccharomyces pombe
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1296.05c.

Description	E-value	Query Range	Subject Range
gi\|7271222 - gi\|7271222\|emb\|CAB81558.1\| cyclin B1 [Nicotiana tabacum]	215.0	[0..4]	[255..167]
gi\|6093215 - gi\|6093215\|emb\|CAB58998.1\| CYCB1-1 protein [Petunia x hybrida]	212.0	[0..4]	[255..182]
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	212.0	[0..4]	[255..197]
gi\|7438501, gi\|4... - pir\|\|T10526 cyclin B1c-ll - yellow lupine, gi\|4884728\|gb\|AAD31790.1\|AF126107_1 mitotic cyclin B1-3 [...	210.0	[0..4]	[255..201]
CCNB1_SOYBN - G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1	209.0	[0..4]	[255..203]
gi\|1752809 - gi\|1752809\|dbj\|BAA14010.1\| cyclin A [Asterina pectinifera]	206.0	[0..1]	[255..199]
gi\|1770188, gi\|7... - pir\|\|T09960 mitosis-specific cyclin 1 - red goosefoot, gi\|1770188\|emb\|CAA71243.1\| mitotic cyclin [Ch...	204.0	[0..4]	[255..198]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSLVHSLA SSSQLEAFDS FEYAEELCTL GSEWIQEAGV LLNLTQNCVI VCLILFRRYC  60
   61 TLYPPRVPDL DAIVMACVSI GSKTTETPAS VQDICNVVVY LKERFKDTNF EARGFIAHDL 120
  121 YSEEMYSSRN RLSNMELEVL RALNFDTHIV IPHKLAIHYL QTLQLIDNKK LLQITWNFLN 180
  181 DASRTRLCVL YPPFSLACGC IAMAARVIGM KLPKDWYRVF DTTKEEIDSL TSILENFYKT 240
  241 SAIAHKTLYL IFTEQVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.221849
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits