| Protein: | ucp3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 601 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ucp3.
| Description | E-value | Query Range |
Subject Range |
|
|
187.0 | [0..4] | [600..383] |
|
|
179.0 | [0..4] | [600..435] |
|
|
178.0 | [0..4] | [600..435] |
|
|
176.0 | [0..4] | [600..435] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MSGRRNETAI RELVQSVSGN NLCADCSTRG VQWASWNLGI FLCLRCATIH RKLGTHVSKV 60
61 KSISLDEWSN DQIEKMKHWG NINANRYWNP NPLSHPLPTN ALSDEHVMEK YIRDKYERKL 120
121 F
|
| Detection Method: |  |
| Confidence: | 31.30103 |
| Match: | 2iqjA |
| Description: | No description for 2iqjA was found. |
|
Region A: Residues: [122-252] |
1 11 21 31 41 51
| | | | | |
1 LDENHSTNSK PPSLPPRTKS SSQSSPMAST STSKSRYADS LSTLHDMGFS DDSVNTHALE 60
61 ETNGDVTRAI EKIVQHGSSK PQKPSTLTST KSTIKLVSAR LKKRNKNLSV HFEDGTKPGD 120
121 AYEVTGDTRA A
|
| Detection Method: | |
| Confidence: | 2.12 |
| Match: | 1vejA |
| Description: | Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.93496113178554 | bayes_pls_golite062009 |
| protein binding | 1.01573863836689 | bayes_pls_golite062009 |
| small conjugating protein binding | 0.527358839933497 | bayes_pls_golite062009 |
| ubiquitin binding | 0.163002723882387 | bayes_pls_golite062009 |
|
Region A: Residues: [253-393] |
1 11 21 31 41 51
| | | | | |
1 SPTLNPFEQM MAMTNQGMSV SPGVETTSSP FFTAPVEPNQ PLQPLRPSMT GPVPSSMGSE 60
61 ATLNMPSTYG IDSNLYTNSN SSSIVQNPLQ PARTGPAAIN YNYTTNYSVS SPSVTNPFFD 120
121 VGSSTQNASL MGSTGYPSSA N
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [394-601] |
1 11 21 31 41 51
| | | | | |
1 NVYYENSYQG VGTSMSDNYQ LPDMSKLSLN EQPAAPSNSN SQYMNTSMPT LDSTNMYGQS 60
61 NQDPYSMSNG VYGSNYSAQP STMQMQATGI APPQPNMSMQ MPMSMQSTGY QMPMENTWVD 120
121 YNGMSQQGNG MQPATMNYSN SMGYDTNVPA DNGYYQQGYG NVMMPPDASY TGTGSYVQPM 180
181 NQPSGGMGAP ADSSKADSYI QRIMQGKQ
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
