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View Structure Prediction Details

Protein: SPAC3A12.09c
Organism: Schizosaccharomyces pombe
Length: 290 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3A12.09c.

Description E-value Query
Range
Subject
Range
URED_PROMH - Urease accessory protein UreD OS=Proteus mirabilis (strain HI4320) GN=ureD PE=1 SV=1
URED_PROMI - Urease accessory protein ureD OS=Proteus mirabilis GN=ureD PE=1 SV=1
260.0 [0..8] [289..15]
gi|25348453 - pir||AC2264 urease accessory protein D [imported] - Nostoc sp. (strain PCC 7120)
URED_NOSS1 - Urease accessory protein UreD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ureD PE=3 SV=1
258.0 [0..4] [289..11]
URED_DECAR - Urease accessory protein UreD OS=Dechloromonas aromatica (strain RCB) GN=ureD PE=3 SV=1
257.0 [0..5] [289..19]
URED_ANAVT - Urease accessory protein UreD OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ureD PE=3 SV=...
255.0 [0..1] [289..8]
URED_ECOLX - Urease accessory protein UreD OS=Escherichia coli GN=ureD PE=2 SV=1
254.0 [0..8] [289..15]
URED_PSE14 - Urease accessory protein UreD OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=...
253.0 [0..5] [289..17]
URED2_PSESM - Urease accessory protein UreD 2 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ureD2 PE=3 SV=...
URED2_PSESM - Urease accessory protein ureD 2 OS=Pseudomonas syringae pv. tomato GN=ureD2 PE=3 SV=1
252.0 [0..5] [289..17]
URED_NOSP7 - Urease accessory protein UreD OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ureD PE=3 SV=...
252.0 [0..2] [289..9]
URED2_PSEU2 - Urease accessory protein UreD 2 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ureD2 PE=3 SV...
250.0 [0..5] [289..17]
gi|45774393 - gi|45774393|gb|AAS76787.1| UreD [Nitrosospira sp. NpAV]
247.0 [0..2] [289..38]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKEGRFRV ECIENVHYVT DMFCKYPLKL IAPKTKLDFS ILYIMSYGGG LVSGDRVALD  60
   61 IIVGKNATLC IQSQGNTKLY KQIPG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPATQQKLDV EVGTNALCLL LQDPVQPFGD SNYIQTQNFV LEDETSSLAL LDWTLHGRSH  60
   61 INEQWSMRSY VSKNCIQMKI PASNQRKTLL RDVLKIFDEP NLHIGL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.679 b.1.1 Immunoglobulin
View Download 0.678 b.1.1 Immunoglobulin
View Download 0.656 b.1.1 Immunoglobulin
View Download 0.655 b.1.1 Immunoglobulin
View Download 0.647 b.1.1 Immunoglobulin
View Download 0.644 b.43.4 Riboflavin synthase domain-like
View Download 0.632 b.1.1 Immunoglobulin
View Download 0.612 b.1.1 Immunoglobulin
View Download 0.595 b.43.4 Riboflavin synthase domain-like

Predicted Domain #3
Region A:
Residues: [192-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAERMHHFEC IGNLYLIGPK FLKTKEAVLN QYRNKEKRIS KTTDSSQMKK IIWTACEIRS  60
   61 VTIIKFAAYN TETARNFLLK LFSDYASFLD HETLRAFWY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.712 N/A N/A a.74.1 Cyclin-like
View Download 0.712 N/A N/A a.74.1 Cyclin-like
View Download 0.708 N/A N/A a.74.1 Cyclin-like
View Download 0.708 N/A N/A a.74.1 Cyclin-like
View Download 0.701 N/A N/A a.7.7 BAG domain
View Download 0.701 N/A N/A a.7.7 BAG domain
View Download 0.666 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.666 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.649 N/A N/A a.7.7 BAG domain
View Download 0.642 N/A N/A a.74.1 Cyclin-like


YRC Informatics Platform - Version 3.0
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