YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1259.04
Organism:	Schizosaccharomyces pombe
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1259.04.

Description	E-value	Query Range	Subject Range
gi\|145019771, gi... - gi\|39971903\|ref\|XP_367342.1\| hypothetical protein MGG_07267 [Magnaporthe grisea 70-15], gb\|EAA56912....	104.0	[0..3]	[80..52]
gi\|49092204, gi\|... - gi\|67525937\|ref\|XP_661030.1\| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	101.0	[0..3]	[64..25]
gi\|85074557 - gi\|85074557\|ref\|XP_955851.1\| hypothetical protein NCU03858 [Neurospora crassa OR74A] gi\|32405128, gi\|... - gi\|32405128\|ref\|XP_323177.1\| predicted protein [Neurospora crassa], gi\|28916874\|gb\|EAA26615.1\| predi...	89.0	[0..3]	[64..31]
gi\|114189387, gi... - gi\|115402929\|ref\|XP_001217541.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	86.0	[0..3]	[63..27]
gi\|116201615, gi... - gi\|88177210\|gb\|EAQ84678.1\| hypothetical protein CHGG_08692 [Chaetomium globosum CBS 148.51], gi\|1162...	84.0	[0..3]	[64..30]
gi\|71000675, gi\|... - gi\|71000675\|ref\|XP_755019.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668526...	82.0	[0..1]	[89..1]
gi\|46137661, gi\|... - gi\|46137661\|ref\|XP_390522.1\| hypothetical protein FG10346.1 [Gibberella zeae PH-1], gi\|42544480\|gb\|E...	79.0	[0..2]	[48..16]
gi\|119195331, gi... - gi\|90307055\|gb\|EAS36686.1\| hypothetical protein CIMG_02040 [Coccidioides immitis RS], gi\|119195331\|r...	65.0	[0..3]	[63..23]
gi\|83773173 - gi\|83773173\|dbj\|BAE63300.1\| unnamed protein product [Aspergillus oryzae] gi\|169779938 - gi\|169779938\|ref\|XP_001824433.1\| hypothetical protein [Aspergillus oryzae RIB40]	62.0	[0..3]	[64..27]
gi\|111065328, gi... - gi\|169607126\|ref\|XP_001796983.1\| hypothetical protein SNOG_06617 [Phaeosphaeria nodorum SN15], gi\|11...	61.0	[0..5]	[71..31]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVKSFKRK YLKLRKSFDS VVLETEEIEQ KIAEISEVYR RILLENAHLN DLLIDMNSTV  60
   61 LPTPPASPPG SPYWEAKPVS HTVFLESPSD VFTLEKPIAS THRWLSKLTA LSKSTNSTLS 120
  121 TPKSFHSPLQ SRGISPSSAQ SSAAVSSSRK QKRKRTSEGP SERRARKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits