YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC569.01c
Organism:	Schizosaccharomyces pombe
Length:	323 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC569.01c.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	151.0	[0..11]	[287..1838]
gi\|47940239 - gi\|47940239\|gb\|AAH72094.1\| LOC432141 protein [Xenopus laevis]	130.0	[0..11]	[244..831]
MYH2 - myosin, heavy chain 2, skeletal muscle, adult	113.0	[0..7]	[320..836]
MYH2_PIG - Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1 gi\|55741490 - ref\|NP_999301.1\| myosin heavy chain 2a [Sus scrofa]	112.0	[0..7]	[320..834]
gi\|109113271 - gi\|109113271\|ref\|XP_001113877.1\| PREDICTED: myosin, heavy polypeptide 2, skeletal muscle, adult [Mac...	112.0	[0..7]	[320..834]
MYH2_CANLF - Myosin-2 OS=Canis lupus familiaris GN=MYH2 PE=3 SV=1	112.0	[0..7]	[320..835]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	112.0	[0..11]	[320..838]

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Predicted Domain #1

Region A:
Residues: [1-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSNENFDND YNLPPPNDSA EDLKIFIKRY ERSVDSTLLE IDENKREALE KYIEERDRKM  60
   61 KYEIECNERL QGWKKLAIER EISEEQSGEV QFPRWIDEWA NTKLGGIFER IFSKMDSMQN 120
  121 DMNSRFDAMQ NEMNSRFDAV QNEMTSMKGE MAEMKVEMVE MKRETIRLNT RIDLLEQKTE 180
  181 ARFQSIEQRF NSIDQRFNSI DRRFDSMEQR LDSMDQKMET IDARSCRSIM LTRKLENTTR 240
  241 SDQGYLASPV PFLNGNEPAN SGLPPIERVE DIDELSKEQC VQYLKGYGIM FSPAETIKLK 300
  301 KRLRDAVGLW SKASTEYEFH QFH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits