YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21B10.07
Organism:	Schizosaccharomyces pombe
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21B10.07.

Description	E-value	Query Range	Subject Range
gi\|3152652 - gi\|3152652\|gb\|AAC17104.1\| endo-1,3(4)-beta-glucanase [Phaffia rhodozyma]	267.0	[0..17]	[418..22]
gi\|38100160, gi\|... - gi\|86196241\|gb\|EAQ70879.1\| hypothetical protein MGCH7_ch7g286 [Magnaporthe grisea 70-15], gi\|3997021...	262.0	[0..8]	[418..96]
gi\|85089591 - gi\|85089591\|ref\|XP_958019.1\| hypothetical protein NCU09904 [Neurospora crassa OR74A] gi\|32418348, gi\|... - gi\|32418348\|ref\|XP_329652.1\| hypothetical protein [Neurospora crassa], gi\|28919326\|gb\|EAA28783.1\| hy...	259.0	[0..5]	[418..10]
gi\|83767818 - gi\|83767818\|dbj\|BAE57957.1\| unnamed protein product [Aspergillus oryzae] gi\|169770979 - gi\|169770979\|ref\|XP_001819959.1\| hypothetical protein [Aspergillus oryzae RIB40]	254.0	[0..109]	[418..128]
gi\|40746962, gi\|... - gi\|67515927\|ref\|XP_657849.1\| hypothetical protein AN0245.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	252.0	[0..129]	[418..21]
gi\|66847910, gi\|... - gi\|70990858\|ref\|XP_750278.1\| endo-1,3(4)-beta-glucanase [Aspergillus fumigatus Af293], gi\|66847910\|g...	249.0	[0..129]	[418..20]
gi\|2326188 - gi\|2326188\|gb\|AAC49904.1\| mixed-linked glucanase precursor [Cochliobolus carbonum]	245.0	[0..100]	[417..17]
gi\|46136479, gi\|... - gi\|46136479\|ref\|XP_389931.1\| hypothetical protein FG09755.1 [Gibberella zeae PH-1], gi\|42553569\|gb\|E...	240.0	[0..127]	[417..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPDSTTDS RHSLSSAALS SASFENIYDP ARKNESTNDV IDNHTDTEID DHDNDHENLD  60
   61 SNNNNENNEA FNEKAAEKKL LPWYRRYFIW ILIFIVALIC SVLIGVLGGV LGHRTAVRDR 120
  121 H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.439	c.47.1	Thioredoxin-like
View	Download	0.372	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.228	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #2

Region A:
Residues: [122-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSYKAKTYSL VKEYKGTTFF DGFDFMNITD PTHGFVQYLD RNSSAKLGLI SANSSNVIMA  60
   61 ADSKHNYSSG RPSIRLQSTQ YFEHGLFILD LIHLPYGCGT WPAFWTLGDD WPNGGEIDIV 120
  121 EGVNVGTSNQ VTLHTGDGCE MEDIKRVMTG TALQTNCWVD APNSYNAGCG VENPSGPSYG 180
  181 EAFNKNGGGV FVLDWRSEGI RSWFFNRSEI PSDITSGSPQ PAKWSEPVAD FPDTKCDIDK 240
  241 MFSKQKILFD LTFCGDWAGS SVYSSAGCPG SCNDFVGNNP HNFTEAYWNI KSLAVYQY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	2cl2A
Description:	No description for 2cl2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits