YRC Public Data Repository - Protein Structure Prediction

Protein:	egd2
Organism:	Schizosaccharomyces pombe
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egd2.

Description	E-value	Query Range	Subject Range
NACAM_MOUSE - Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca P...	207.0	[0..10]	[173..2030]
gi\|73968420 - gi\|73968420\|ref\|XP_531640.2\| PREDICTED: similar to nascent polypeptide-associated complex alpha poly...	206.0	[0..10]	[173..222]
gi\|109480121 - gi\|109480121\|ref\|XP_213821.2\| PREDICTED: similar to Nascent polypeptide-associated complex alpha sub...	205.0	[0..10]	[173..1958]
gi\|114644223 - gi\|114644223\|ref\|XP_509538.2\| PREDICTED: similar to alpha-NAC, muscle-specific form gp220 isoform 5 ...	197.0	[0..10]	[173..284]
gi\|113419511, gi... - gi\|113419511\|ref\|XP_001133202.1\| PREDICTED: similar to nascent polypeptide-associated complex alpha ...	195.0	[0..12]	[173..1622]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVESQPVEK ISELPAGSTT VVHAEKAQKL IQKLGLKRVE GITRVAMRRP KNILLIINEP  60
   61 IVYKSSNNAY IVLGKVTVED MAAQARAFNE SQKQATETKE EAAITEESGD AQPADTAKIE 120
  121 ESFEQEKAVD ETGVDAKDIE LVMAQANVSR AKAVTALKEN NSDVVNAIMS LTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1tr8A
Description:	Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits