YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC25B8.15c
Organism:	Schizosaccharomyces pombe
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC25B8.15c.

Description	E-value	Query Range	Subject Range
gi\|46128299, gi\|... - gi\|46128299\|ref\|XP_388703.1\| hypothetical protein FG08527.1 [Gibberella zeae PH-1], gi\|42549261\|gb\|E...	241.0	[0..7]	[229..8]
gi\|7267225, gi\|2... - gi\|7267225\|emb\|CAB80832.1\| AT4g04670 [Arabidopsis thaliana], gi\|5732053\|gb\|AAD48952.1\|AF149414_1 con...	241.0	[0..8]	[213..1]
gi\|46434776, gi\|... - gi\|68485726\|ref\|XP_713241.1\| hypothetical protein CaO19.2408 [Candida albicans SC5314], gi\|68485623\|... orf19.2408, orf1... - orf19.2408 CGDID:CAL0001459 Assembly 19, Contig19-10148 (47591, 46764) CDS, reverse complemented, tr... gi\|238879777 - gi\|238879777\|gb\|EEQ43415.1\| conserved hypothetical protein [Candida albicans WO-1]	240.0	[0..9]	[222..4]
gi\|114557204 - gi\|114557204\|ref\|XP_001167649.1\| PREDICTED: tRNA-yW synthesizing protein 3 homolog isoform 2 [Pan tr...	239.0	[0..9]	[234..6]
TYW3 - tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	238.0	[0..9]	[234..6]
TYW3_PONPY - tRNA wybutosine-synthesizing protein 3 homolog - Pongo pygmaeus (Orangutan) TYW3_PONAB - tRNA wybutosine-synthesizing protein 3 homolog OS=Pongo abelii GN=TYW3 PE=2 SV=1	237.0	[0..9]	[233..6]
TYW3_MOUSE - tRNA wybutosine-synthesizing protein 3 homolog OS=Mus musculus GN=Tyw3 PE=1 SV=1	235.0	[0..9]	[230..6]

Back

Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIKGIDVSF DAQKKEILEG LKSSVPDASP KGHPDSPIFP LLDVINSHPD WVTTSSCSGR  60
   61 ISVYVQGANS RKGGGYWLFV SHQAHEELPP VLEDEKVEYG KVPSSPVEGN REIQYAFEPM 120
  121 ILHVQTRSLA NAQHLQRVAA SCGFRETGIQ GSEQKFIVAI RTSLRMDIPI GCLTASEKLQ 180
  181 FYITREYMCF LFKRSVEYFT ENGNRMARLK EQLERQVEKR MKPRRKLRNM DDYLVQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	2drvA
Description:	No description for 2drvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits