YRC Public Data Repository - Protein Structure Prediction

Protein:	sft2
Organism:	Schizosaccharomyces pombe
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sft2.

Description	E-value	Query Range	Subject Range
gi\|42547772, gi\|... - gi\|46108848\|ref\|XP_381482.1\| hypothetical protein FG01306.1 [Gibberella zeae PH-1], gi\|42547772\|gb\|E...	214.0	[0..3]	[200..161]
gi\|67521680, gi\|... - gi\|67521680\|ref\|XP_658901.1\| hypothetical protein AN1297.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	199.0	[0..4]	[200..5]
gi\|68482670, gi\|... - gi\|68482941\|ref\|XP_714601.1\| hypothetical protein CaO19.3184 [Candida albicans SC5314], gi\|68482670\|... orf19.3184, orf1... - orf19.3184 CGDID:CAL0002420 Assembly 19, Contig19-10170 (44383, 45030) CDS, translated using codon t... gi\|238882589 - gi\|238882589\|gb\|EEQ46227.1\| conserved hypothetical protein [Candida albicans WO-1]	189.0	[0..4]	[200..7]
gi\|207347935 - gi\|207347935\|gb\|EDZ73953.1\| YBL102Wp-like protein [Saccharomyces cerevisiae AWRI1631] SFT2 - Non-essential tetra-spanning membrane protein found mostly in the late Golgi, can suppress some sed5... gi\|151946299 - gi\|151946299\|gb\|EDN64521.1\| suppressor of sedfive ts [Saccharomyces cerevisiae YJM789] SFT2_YEAST - Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1...	184.0	[0..6]	[195..22]
gi\|49651162 - gi\|49651162\|emb\|CAG78099.1\| YALI0F11561p [Yarrowia lipolytica] gi\|49651162, gi\|... - gi\|50555768\|ref\|XP_505292.1\| YALI0F11561p [Yarrowia lipolytica], gi\|49651162\|emb\|CAG78099.1\| YALI0F1...	181.0	[0..7]	[200..2]
gi\|49643377 - gi\|49643377\|emb\|CAG99329.1\| KLLA0E06535p [Kluyveromyces lactis] gi\|49643377, gi\|... - gi\|50308481\|ref\|XP_454242.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643377\|emb\|CAG9932...	179.0	[0..3]	[195..9]
gi\|46098154, gi\|... - gi\|71012445\|ref\|XP_758496.1\| hypothetical protein UM02349.1 [Ustilago maydis 521], ref\|XP_399964.1\| ...	178.0	[0..2]	[195..5]
gi\|49529068 - gi\|49529068\|emb\|CAG62732.1\| unnamed protein product [Candida glabrata] gi\|49529068, gi\|... - gi\|50294686\|ref\|XP_449754.1\| hypothetical protein CAGL0M09427g [Candida glabrata CBS138], gi\|4952906...	177.0	[0..13]	[192..26]
gi\|50422481, gi\|... - gi\|50422481\|ref\|XP_459808.1\| hypothetical protein DEHA0E12078g [Debaryomyces hansenii CBS767], gi\|49...	170.0	[0..6]	[200..11]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGSFQSRLQ SIIQRTGETT AESTNSWYNR LRTSMPWSND YTEIPTNASG GNSYFQSSEF  60
   61 SLSRWERYML FGICLLGSLA CYAIACFMFP VLVLKPRKFV LLWTMGSLLA VLGFAIVQGF 120
  121 VAHFRQLTTM ERLPITLSYF VTLLATIIAT IKIKSTILSI VFGVLHILSF VAYLIAFFPF 180
  181 GTRTVSLGTR MASRSLSNWL P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.468521
Match:	PF07770.3
Description:	No description for PF07770.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits