YRC Public Data Repository - Protein Structure Prediction

Protein:	mrp4
Organism:	Schizosaccharomyces pombe
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrp4.

Description	E-value	Query Range	Subject Range
gi\|116629458, gi... - gi\|116629458\|ref\|YP_814630.1\| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi\|116095...	283.0	[0..43]	[258..9]
RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii GN=rpsB PE=3 SV=1 RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsB PE... gi\|227890237, gi... - gi\|227890237\|ref\|ZP_04008042.1\| 30S ribosomal protein S2 [Lactobacillus johnsonii ATCC 33200], gi\|22...	282.0	[0..45]	[258..1]
gi\|254045811, gi... - gi\|254556884\|ref\|YP_003063301.1\| 30S ribosomal protein S2 [Lactobacillus plantarum JDM1], gi\|2540458... RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum GN=rpsB PE=3 SV=1 RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rp... gi\|227856874, gi... - gi\|227894840\|ref\|ZP_04012645.1\| 30S ribosomal protein S2 [Lactobacillus plantarum subsp. plantarum A...	281.0	[0..45]	[260..1]
gi\|26106512, gi\|... - gi\|26246115\|ref\|NP_752154.1\| 30S ribosomal protein S2 [Escherichia coli CFT073], gi\|26106512\|gb\|AAN7... gi\|91209238, gi\|... - gi\|91209238\|ref\|YP_539224.1\| 30S ribosomal protein S2 [Escherichia coli UTI89], gi\|91070812\|gb\|ABE05...	279.0	[0..25]	[259..46]
gi\|115378600, gi... - gi\|115378600\|ref\|ZP_01465753.1\| ribosomal protein S2 [Stigmatella aurantiaca DW4/3-1], gi\|115364387\|...	279.0	[0..48]	[260..38]
gi\|110804221, gi... - gi\|110804221\|ref\|YP_687741.1\| 30S ribosomal protein S2 [Shigella flexneri 5 str. 8401], gi\|110613769...	279.0	[0..25]	[259..46]
RS2_LACAC - 30S ribosomal protein S2 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=rp... RS2_LACAC - 30S ribosomal protein S2 OS=Lactobacillus acidophilus GN=rpsB PE=3 SV=1 gi\|227868207, gi... - gi\|227904188\|ref\|ZP_04021993.1\| 30S ribosomal protein S2 [Lactobacillus acidophilus ATCC 4796], gi\|2...	277.0	[0..47]	[260..4]
RS2_LACS1 - 30S ribosomal protein S2 OS=Lactobacillus salivarius (strain UCC118) GN=rpsB PE=3 SV=1	277.0	[0..45]	[260..1]
RS2_THEPX - 30S ribosomal protein S2 OS=Thermoanaerobacter sp. (strain X514) GN=rpsB PE=3 SV=1	276.0	[0..45]	[257..1]
RS2_THEP3 - 30S ribosomal protein S2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsB PE...	276.0	[0..45]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRKLSPEQ LVARRLKIRD WNHKIGAVVA PHYSPTLSIR NPAPPSQLSL PLLLSSGAHL  60
   61 GHSTSIWNPY TQPFIYGKRE GIHIISLDQT MVYLRRAISV VRSIAKENGI ILFIGTRNGQ 120
  121 KDSVVAAAKR ARGYHIFDRW LPGLLTNARE VQGKLGGSIL CKDNRGKLIQ TDKKPSYVFP 180
  181 DLMVILNPLE NKSACLEAQK THVPTIGIID TDADPRMVTY PIPANDDSLR CTDLIAGLLS 240
  241 RVAEQEYQKA NQAFEKDKFT LPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.68569821712377	bayes_pls_golite062009
structural molecule activity	9.23086340425923	bayes_pls_golite062009
RNA binding	0.825542354503353	bayes_pls_golite062009
binding	0.775544224160057	bayes_pls_golite062009
nucleic acid binding	0.588158477256084	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: