YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP4H10.11c
Organism:	Schizosaccharomyces pombe
Length:	689 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP4H10.11c.

Description	E-value	Query Range	Subject Range
ACSA_ALKEH - Acetyl-coenzyme A synthetase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1...	483.0	[0..1]	[684..1]
gi\|75907429, gi\|... - gi\|75907429\|ref\|YP_321725.1\| acetyl-CoA synthetase [Anabaena variabilis ATCC 29413], gi\|75701154\|gb\|...	483.0	[0..1]	[680..10]
ACSA_THEEB - Acetyl-coenzyme A synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=acsA PE=3 SV=1 ACSA_SYNEL - Acetyl-coenzyme A synthetase OS=Synechococcus elongatus GN=acsA PE=3 SV=1	480.0	[0..14]	[680..30]
ACSA_SYNY3 - Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsA PE=3 SV=1 ACSA_SYNY3 - Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=acsA PE=3 ... gi\|7437824 - pir\|\|S75763 acetate-CoA ligase (EC 6.2.1.1) - Synechocystis sp. (strain PCC 6803)	480.0	[0..1]	[680..9]
ACSA_HALHL - Acetyl-coenzyme A synthetase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=acsA PE=3 SV=1	479.0	[0..1]	[684..1]
gi\|48763827 - ref\|ZP_00268380.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Rhodospirillum rub... gi\|83577818, gi\|... - gi\|83594904\|ref\|YP_428656.1\| acetyl-coenzyme A synthetase [Rhodospirillum rubrum ATCC 11170], gi\|835...	478.0	[0..1]	[684..1]
gi\|81169042, gi\|... - gi\|81300161\|ref\|YP_400369.1\| acetyl-CoA synthetase [Synechococcus elongatus PCC 7942], gi\|81169042\|g... gi\|56685171, gi\|... - gi\|56750212\|ref\|YP_170913.1\| acetyl-CoA synthetase [Synechococcus elongatus PCC 6301], gi\|56685171\|d...	478.0	[0..1]	[680..10]
gi\|82948117, gi\|... - gi\|83313276\|ref\|YP_423540.1\| Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase [Magnetospirillum ma...	478.0	[0..3]	[684..1]
gi\|53803647, gi\|... - gi\|53803647\|ref\|YP_114474.1\| acetyl-CoA synthetase [Methylococcus capsulatus str. Bath], gi\|53757408...	477.0	[0..1]	[684..19]
gi\|94265000, gi\|... - gi\|94265000\|ref\|ZP_01288770.1\| Acetate--CoA ligase [delta proteobacterium MLMS-1], gi\|93454547\|gb\|EA...	476.0	[0..1]	[680..65]

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Predicted Domain #1

Region A:
Residues: [1-689]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKDYYCVE TKDSKQPGES YIYRSIHSAG KLLDTPEDGV STVYDLLCTA AKNHGEKQAM  60
   61 GSRKLIKENR EEREIIRKVD NEEVVEKKLW TTYELGPYEY ISFNKVYEIA LALGSGLVAS 120
  121 GITSETTMLF FAATSAKWFT TAQGCSSQAI PIVTAYETLG EDGIYTSLDE CKSRAIFTDP 180
  181 NLIPKLLGPL KQSTWVKLIV CSSTPSEDLV ELVKSTAPDV EIITYDNLLS LGKEKPQPPH 240
  241 PPKADDICCY MYTSGSTGKP KGVVLLHRNI IAALGGINRI LSQHINVKDY VLAYLPLAHI 300
  301 FEFIFEMCCL YWGGVLGYAS PRTLTDASVV NCKGDLTEFR PTVLIGVPAV YELIKKGILA 360
  361 KVSSMPAHRQ KVFSGSLSLK QYLIERNLPG SAALDAIVFN KVKAATGGRL RYCISGGAAL 420
  421 AASTQAFLSS CICPVLPGYG LTETCAGSFV LSPEQWHLYA NTVGFPIPSI EFKLVDIPDL 480
  481 GYYTDSSPPR GEVWIRGPAV CNGYLNRPED NKAAFTEDGW FKTGDVGEIA KGNTLRLIDR 540
  541 KKNIVKSLNG EYIALEKIEA QFFTSPLVSN VCAYADVNHA KPVVIVNPDE NGLRTYLTKN 600
  601 SGSSFNGNPN DTLTNLCKDS GVQHLILKEL INIGKQQRLA SIEIPEGVVL SDFEWTAENN 660
  661 FLTASRKVKR QVIVAHYSDE IQKAYSKKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits