YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC146.06c
Organism:	Schizosaccharomyces pombe
Length:	703 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC146.06c.

Description	E-value	Query Range	Subject Range
gi\|39975005, gi\|... - gi\|39975005\|ref\|XP_368893.1\| hypothetical protein MGG_00351 [Magnaporthe grisea 70-15], gb\|EAA48693....	811.0	[0..40]	[703..117]
gi\|46125337, gi\|... - gi\|46125337\|ref\|XP_387222.1\| hypothetical protein FG07046.1 [Gibberella zeae PH-1], gi\|42553762\|gb\|E...	795.0	[0..49]	[703..122]
gi\|58257674 - gi\|58257674\|dbj\|BAA76862.3\| KIAA1018 protein [Homo sapiens]	743.0	[0..6]	[703..342]
gi\|114659867 - gi\|114659867\|ref\|XP_510266.2\| PREDICTED: similar to KIAA1018 protein [Pan troglodytes]	741.0	[0..6]	[703..319]
gi\|115400093, gi... - gi\|115400093\|ref\|XP_001215635.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	729.0	[0..17]	[703..58]
gi\|109080444 - gi\|109080444\|ref\|XP_001109813.1\| PREDICTED: similar to C01G5.8 [Macaca mulatta]	726.0	[0..6]	[703..318]
gi\|66846611, gi\|... - gi\|70986991\|ref\|XP_748981.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668466...	721.0	[0..52]	[703..121]
gi\|169765764 - gi\|169765764\|ref\|XP_001817353.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765208 - gi\|83765208\|dbj\|BAE55351.1\| unnamed protein product [Aspergillus oryzae]	716.0	[0..52]	[703..121]
gi\|40738431, gi\|... - gi\|67541016\|ref\|XP_664282.1\| hypothetical protein AN6678.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	707.0	[0..52]	[664..122]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFFNEACD INTPDKSGVN ENKLCFPPLK VVCQAPETTV KGQVANTNKH NVYSTKNSMY  60
   61 LLGFEEILNT VLDCEPHIFT DDELRVIENF KALDSDERYL FVRLFMRKRN KWFRVGHLTY 120
  121 PDCKDVIACC KQLVLKNFFE D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLMSTEEII EILSLDELRS LARQTKVCGK SRSEISKEII FLSKRQSVLH CNGQQFLSFD  60
   61 AFGVMHKQES FLRKQLLYQC KSCVKPKKIL VDLFHRINIV YFRSSIYDEQ SLTSLILARL 120
  121 NKFSYPNYVL SRTSNVFNCR AQCLEYVEVL ELSKNLVPIF ENTAASDKEA LEQALNSFFE 180
  181 IYPIWSTYLN EDIREFWVEE NRKVDTRLVR FSFSFRPGAV YTYLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [367-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKSLNILAKS RLVEVEHEIL DTLLSQNIYL VGKRGHWYNR KALLEYNFKT EDTNVLRYWK  60
   61 TLALSTCENG IEDKYTHLRY YFSLQRRLVR LRKCLKVSNT TELKSMKLIN NNPSRLFLHG 120
  121 ERIHNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.936	a.118.8	TPR-like

Predicted Domain #4

Region A:
Residues: [493-703]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLSNRTVWRS KTNNAITVEE LALQHYQSIG WEGIHAESSI LLTLFALTFW DILFEDVPGV  60
   61 FQSPFQSAPL DLHTDSFYIS RESTIMKRLE EIRNGKAGLI IKDNYIREHQ RKTFCVGLNW 120
  121 SYTCEMLLEI VDCINDNGLA QIFLALTQDY KNSSSGIPDL CLWNPSKKKF MFSEVKSDND 180
  181 RLSEAQKFWI SLLISSEVDV EVCHVSMHKK K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits