YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3417435, gi\|1...
Organism:	Schizosaccharomyces pombe
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3417435, gi|1....

Description	E-value	Query Range	Subject Range
gi\|2257566 - gi\|2257566\|dbj\|BAA21458.1\| MITOCHONDRIAL OUTER MEMBRANE PROTEIN MMM1 [Schizosaccharomyces pombe]	319.0	[0..4]	[321..36]
MMM1_NEUCR - Maintenance of mitochondrial morphology protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-... MMM1_NEUCR - Maintenance of mitochondrial morphology protein 1 OS=Neurospora crassa GN=mmm1 PE=2 SV=1	270.0	[0..5]	[318..11]
MMM1_MAGGR - Maintenance of mitochondrial morphology protein 1 OS=Magnaporthe grisea GN=MMM1 PE=3 SV=1 MMM1_MAGO7 - Maintenance of mitochondrial morphology protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-461...	267.0	[0..5]	[318..12]
gi\|42544365, gi\|... - gi\|46111429\|ref\|XP_382772.1\| hypothetical protein FG02596.1 [Gibberella zeae PH-1], gi\|42544365\|gb\|E...	262.0	[0..5]	[321..12]
gi\|40747578, gi\|... - gi\|75859140\|ref\|XP_868910.1\| hypothetical protein AN9528.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... MMM1_EMENI - Maintenance of mitochondrial morphology protein 1 OS=Emericella nidulans GN=mmm1 PE=3 SV=1	246.0	[0..4]	[319..25]
MMM1_CANAL - Maintenance of mitochondrial morphology protein 1 OS=Candida albicans GN=MMM1 PE=3 SV=1 MMM1_CANAL - Maintenance of mitochondrial morphology protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876...	239.0	[0..6]	[307..70]
MMM1_ASHGO - Maintenance of mitochondrial morphology protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51... MMM1_ASHGO - Maintenance of mitochondrial morphology protein 1 OS=Ashbya gossypii GN=MMM1 PE=3 SV=1	235.0	[0..5]	[318..100]
MMM1_YEAS7 - Maintenance of mitochondrial morphology protein 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=MMM... MMM1_YEAST - Maintenance of mitochondrial morphology protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... MMM1_YEAS6 - Maintenance of mitochondrial morphology protein 1 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=M... MMM1 - ER integral membrane protein, component of the ERMES complex that links the ER to mitochondria and m...	235.0	[0..5]	[309..93]
MMM1_CANGA - Maintenance of mitochondrial morphology protein 1 OS=Candida glabrata GN=MMM1 PE=3 SV=1 MMM1_CANGA - Maintenance of mitochondrial morphology protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / ...	234.0	[0..6]	[318..97]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHLPQGSFT QGLIVGQLLT LAIIYVFLRF FLFCSPIPKS VANSPKQTGN ETPDETPSTP  60
   61 LSNNKKRYKK PLTILEPHIL NLLYDVNEHE PESLDWFNVL IAQALIQFRY DACSNDVALR 120
  121 KLETVLNKGA QDKSMVDHIY VRDLSLGDGF PVFSHCRVLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.556	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.458	a.118.8	TPR-like
View	Download	0.346	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.335	a.118.12	Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
View	Download	0.334	a.29.2	Bromodomain

Predicted Domain #2

Region A:
Residues: [161-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQHNSSQLRA EMLVSLTDNI NCTVDTKLLL NFPKPAFATL PLSITVRICK FVGKVSLFTT  60
   61 LIIMIYFSPS NGAGQPAYMN LSFDPNFVIS LQVSSLVGAR SKLQDIPKIT QLIESRIRQW 120
  121 FTNRCVSPQF QQIAIPNLWP TSAKEGHARS HAPQEESSNE D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits