YRC Public Data Repository - Protein Structure Prediction

Protein:	sec2302
Organism:	Schizosaccharomyces pombe
Length:	765 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec2302.

Description	E-value	Query Range	Subject Range
gi\|73991096, gi\|... - gi\|73991096\|ref\|XP_857053.1\| PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 10 [Canis...	1052.0	[0..3]	[765..8]
gi\|13365827 - gi\|13365827\|dbj\|BAB39299.1\| hypothetical protein [Macaca fascicularis]	1050.0	[0..3]	[765..8]
SEC23B - Sec23 homolog B (S. cerevisiae)	1050.0	[0..3]	[765..8]
SC23A_DANRE - Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1	1049.0	[0..3]	[765..8]
gi\|91086195 - gi\|91086195\|ref\|XP_971475.1\| PREDICTED: similar to protein transport protein sec23 [Tribolium castan...	1048.0	[0..3]	[765..8]
SC23B_BOVIN - Protein transport protein Sec23B OS=Bos taurus GN=SEC23B PE=2 SV=1	1048.0	[0..3]	[765..8]
SC23B_MOUSE - Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=1 SV=1 gi\|126035610 - gi\|126035610\|gb\|ABN72531.1\| SEC23B [Mus spretus]	1048.0	[0..3]	[765..8]

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Predicted Domain #1

Region A:
Residues: [1-765]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFEDIEDQD GIRLSWNTFS ATPAENARAV IPIAAMYTPL HENERMTIEQ YDPVACRAPC  60
   61 RAVLNPYCHV DLRARFWICP FCFQRNPLPA QYSDISSNSL PLELLSQSTT MEYVLSKPVK 120
  121 SPPVFLFVMD TAVDESELTA LKDAVIVSLS LLPPDAIVGL ITYGSLIQVH EIGFEAMPKS 180
  181 YVFQPAADYS TMKLQQLLAL SGNQIRSSSS KAKISGTGIT LNLGAASRFL MPVQKCEMHL 240
  241 LNILEQLQPD CLEVPAGQRQ LRCTGAAVKI ASDLLGIAFP KCGSRIELFC GGPCTVGLGQ 300
  301 VVSTELKEPM RSHSEIANDK AKHFKKSKKF YSSLAERLSN QGHALDLFAG CLDQVGIMEM 360
  361 ENLVNNTGGA IVLSDSFTTS IFKQSFQRLF SVDASGYLKM GFMANLEVLT SKGLTICGMI 420
  421 GNGVGENKKG TNISDTQIGI SKTNSWKMAA ISPKSSYALY FDLGKEMGNP NSQRPTQAFI 480
  481 QFLTYYQHSS GTYRLRVTTI SRSFITGNAK SISESFDQEA AAAIVARMAL FKCQTEDEMS 540
  541 VTRWIDRNLI RLCQHFADYR KEDPSSFRLL PNFTLYPQFI FHLRRSPFLH IFNNSPDETS 600
  601 FYRHMLNVAD VNDSLIMIQP TLQSYSFNEP EGVPVLLDSV SIKPDVILLL DTYFHILIFH 660
  661 GSTIAQWRNA GYQEQPEYVN LKELLLAPRL EVTELLADRF PIPRFIVCDQ GGSQARFLLS 720
  721 RINPSVSFNK SSQFSPMSKD SETVLTDDVN LQKFMDHLRK MAVIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nupA
Description:	No description for 2nupA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits