YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC31G5.04
Organism:	Schizosaccharomyces pombe
Length:	362 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC31G5.04.

Description	E-value	Query Range	Subject Range
LEU3_AQUAE - 3-isopropylmalate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=leuB PE=3 SV=1 LEU3_AQUAE - 3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1	409.0	[0..5]	[361..2]
gi\|98660247, gi\|... - gi\|98660247\|dbj\|GAA02422.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476788...	404.0	[0..7]	[360..3]
gi\|82400648, gi\|... - gi\|82501358\|ref\|ZP_00886702.1\| isocitrate dehydrogenase [Caldicellulosiruptor saccharolyticus DSM 89...	402.0	[0..6]	[361..2]
orf19.2525, orf1... - orf19.2525 CGDID:CAL0002415 Assembly 19, Contig19-10151 (10304, 11434) CDS, translated using codon t... gi\|46439950, gi\|... - gi\|68475341\|ref\|XP_718193.1\| hypothetical protein CaO19.2525 [Candida albicans SC5314], gi\|68475148\|...	401.0	[0..5]	[359..20]
gi\|91188768, gi\|... - gi\|91227116\|ref\|ZP_01261600.1\| 3-isopropylmalate dehydrogenase [Vibrio alginolyticus 12G01], gi\|9118...	401.0	[0..2]	[362..1]
gi\|254229746, gi... - gi\|75854663\|ref\|ZP_00762342.1\| COG0473: Isocitrate/isopropylmalate dehydrogenase [Vibrio sp. Ex25], ...	401.0	[0..2]	[362..1]
LEU3_VIBVU - 3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=leuB PE=3 SV=1 LEU3_VIBVU - 3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1	400.0	[0..2]	[362..1]
LEU3_VIBVY - 3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=leuB PE=3 SV=1	400.0	[0..2]	[362..1]
gi\|149747566, gi... - gi\|153839177\|ref\|ZP_01991844.1\| 3-isopropylmalate dehydrogenase [Vibrio parahaemolyticus AQ3810], gi... LEU3_VIBPA - 3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1 LEU3_VIBPA - 3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=l...	399.0	[0..2]	[362..1]
gi\|254292105, gi... - gi\|254292105\|ref\|ZP_04962879.1\| 3-isopropylmalate dehydrogenase [Vibrio cholerae AM-19226], gi\|19775... gi\|148874049, gi... - gi\|153830483\|ref\|ZP_01983150.1\| 3-isopropylmalate dehydrogenase [Vibrio cholerae 623-39], gi\|1488740... gi\|225355098, gi... - gi\|75819161\|ref\|ZP_00749255.1\| COG0473: Isocitrate/isopropylmalate dehydrogenase [Vibrio cholerae V5... tr\|A0A085QHZ7\|A0... - 3-isopropylmalate dehydrogenase OS=Vibrio cholerae GN=leuB PE=3 SV=1	399.0	[0..2]	[362..1]

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Predicted Domain #1

Region A:
Residues: [1-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATRRIVLG LIPADGIGKE VVPAARRLME NLPAKHKLKF DFIDLDAGWG TFERTGKALP  60
   61 ERTVERLKTE CNAALFGAVQ SPTHKVAGYS SPIVALRKKM GLYANVRPVK SLDGAKGKPV 120
  121 DLVIVRENTE CLYVKEERMV QNTPGKRVAE AIRRISEEAS TKIGKMAFEI AKSRQKIRES 180
  181 GTYSIHKKPL VTIIHKSNVM SVTDGLFRES CRHAQSLDPS YASINVDEQI VDSMVYRLFR 240
  241 EPECFDVVVA PNLYGDILSD GAASLIGSLG LVPSANVGDN FVMSEPVHGS APDIAGRGIA 300
  301 NPVATFRSVA LMLEFMGHQD AAADIYTAVD KVLTEGKVLT PDLGGKSGTN EITDAVLANI 360
  361 HN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	1x0lA
Description:	Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits