YRC Public Data Repository - Protein Structure Prediction

Protein:	ubc1
Organism:	Schizosaccharomyces pombe
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubc1.

Description	E-value	Query Range	Subject Range
gi\|62738886 - gi\|62738886\|pdb\|1Z2U\|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme...	207.0	[0..2]	[151..2]
gi\|456568 - gi\|456568\|gb\|AAA64427.1\| ubiquitin conjugating enzyme	206.0	[0..5]	[152..2]
gi\|109066782 - gi\|109066782\|ref\|XP_001096263.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)... gi\|114613001, gi... - gi\|114613001\|ref\|XP_519070.2\| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa... UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)	206.0	[0..5]	[151..2]
gi\|28569271 - gi\|28569271\|gb\|AAL99225.1\| ubiquitin-conjugating enzyme E2 [Gossypium raimondii] gi\|28569269 - gi\|28569269\|gb\|AAL99224.1\| ubiquitin-conjugating enzyme E2 [Gossypium thurberi]	206.0	[0..5]	[152..2]
gi\|37590333, gi\|... - gi\|41152425\|ref\|NP_955958.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) [Danio rerio...	205.0	[0..5]	[151..2]
gi\|115187616 - gi\|115187616\|gb\|ABI84263.1\| ubiquitin carrier-like protein [Arachis hypogaea]	205.0	[0..5]	[152..2]
gi\|116487484, gi... - gi\|118404876\|ref\|NP_001072891.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog) [Xenopus (Silur... gi\|54311502, gi\|... - gi\|54311502\|gb\|AAH84849.1\| LOC495381 protein [Xenopus laevis], gi\|49899030\|gb\|AAH76728.1\| Ube2d2-pro...	205.0	[0..5]	[151..2]
UBC4_SOLLC - Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1 gi\|83283973 - gi\|83283973\|gb\|ABC01894.1\| ubiquitin-conjugating enzyme E2-like protein [Solanum tuberosum]	205.0	[0..5]	[152..2]
UBC28_ARATH - Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1	205.0	[0..5]	[152..2]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNRSRRIA KELADVQQDK QAGIQVWTIN DDISHLKGMF RGPEGTPYEG GYFVVDIEIP  60
   61 IDYPFRPPKM NFDTKIYHPN VSSQTGAICL DILKDQWSPV YTMKSALISL QSLLCTPEPS 120
  121 NPQDAQVAQV YLQNYQQFVR TAREWTSSYA AAPAGVDLDA ENTEFGGIDP NIITNLQQFG 180
  181 FSTELIVRVL QREHIKSQED LKDYPNGING ILDQLLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1tteA
Description:	The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits