YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC887.15c
Organism:	Schizosaccharomyces pombe
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC887.15c.

Description	E-value	Query Range	Subject Range
gi\|46097011, gi\|... - gi\|71005916\|ref\|XP_757624.1\| hypothetical protein UM01477.1 [Ustilago maydis 521], ref\|XP_399092.1\| ...	197.0	[0..3]	[291..20]
gi\|67516717, gi\|... - gi\|67516717\|ref\|XP_658244.1\| hypothetical protein AN0640.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	195.0	[0..7]	[291..25]
gi\|73954145 - gi\|73954145\|ref\|XP_546281.2\| PREDICTED: similar to CG1998-PA [Canis familiaris]	192.0	[0..1]	[284..324]
SUR2_YEAST - Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR2 PE... SUR2 - Sphinganine C4-hydroxylase, catalyses the conversion of sphinganine to phytosphingosine in sphingoli...	191.0	[0..7]	[284..42]
gi\|37722567 - gi\|37722567\|gb\|AAN77731.1\| sphinganine hydroxylase [Pichia ciferrii]	188.0	[0..7]	[284..26]
gi\|85084657 - gi\|85084657\|ref\|XP_957356.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28918446, gi\|... - gi\|32411679\|ref\|XP_326320.1\| hypothetical protein [Neurospora crassa], gi\|28918446\|gb\|EAA28120.1\| hy...	188.0	[0..6]	[284..151]
gi\|50288857, gi\|... - gi\|50288857\|ref\|XP_446858.1\| unnamed protein product [Candida glabrata], gi\|49526167\|emb\|CAG59791.1\|... gi\|49526167 - gi\|49526167\|emb\|CAG59791.1\| unnamed protein product [Candida glabrata]	187.0	[0..1]	[284..31]
gi\|45184758, gi\|... - gi\|45184758\|ref\|NP_982476.1\| AAL066Wp [Ashbya gossypii ATCC 10895], gi\|44980104\|gb\|AAS50300.1\| AAL06... gi\|44980104 - gi\|44980104\|gb\|AAS50300.1\| AAL066Wp [Ashbya gossypii ATCC 10895]	185.0	[0..7]	[284..40]
gi\|49641796, gi\|... - gi\|50305407\|ref\|XP_452663.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641796\|emb\|CAH0151... gi\|49641796 - gi\|49641796\|emb\|CAH01514.1\| KLLA0C10406p [Kluyveromyces lactis]	182.0	[0..6]	[283..40]
gi\|53793724 - gi\|53793724\|gb\|AAU93587.1\| Sterol desaturase family protein [Solanum demissum]	180.0	[0..12]	[281..17]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTVEMLTT WNPVTVSLVS PVIIYWVASA FFGFLHYIEL PVFEKYRIHP PEEIARRNRV  60
   61 PQMAVVKAVL FQQLCEVVVG IA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAMFEGYPEP IDEAKQMLRY EAFFSKNLPA LLQVAPFAPK LAYNFIVPAF QYFFAFFIID  60
   61 SWQYFWHRYL HYNKKLYNMI HAHHHRLQVP YAMGALYNHP FEGLILDTFG AGVAYLAAGL 120
  121 SPQQAVIFFT LSTLKTVDDH CGYVFPYDPL QMFFANNARY HDLHHQPYGF QKNFSQPFFT 180
  181 FWDHVLGTYM PPKSETPYEK KQKAKNAKKV N

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.30103
Match:	PF04116.4
Description:	No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits